Eads001567.1
Basic Information
- Insect
- Exocentrus adspersus
- Gene Symbol
- lola
- Assembly
- GCA_029955175.1
- Location
- JANEYG010000002.1:4710996-4716831[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.42 29 6.1 0.3 8 21 2 15 2 16 0.92 2 19 0.00037 0.025 15.7 1.3 1 21 36 56 36 57 0.94 3 19 0.0063 0.43 11.8 1.6 1 21 65 85 65 86 0.95 4 19 0.00064 0.044 15.0 2.7 1 21 89 109 89 110 0.93 5 19 0.11 7.7 7.9 1.9 1 23 118 141 118 141 0.96 6 19 0.014 0.94 10.8 0.9 1 21 145 165 145 166 0.94 7 19 5.9e-05 0.004 18.2 0.2 3 21 187 205 185 206 0.94 8 19 0.012 0.82 11.0 3.8 1 20 214 233 214 236 0.93 9 19 0.00062 0.043 15.0 1.0 2 21 255 274 254 275 0.94 10 19 0.0096 0.66 11.3 5.3 1 23 283 306 283 306 0.95 11 19 0.0012 0.084 14.1 1.9 1 20 329 348 329 350 0.96 12 19 0.00018 0.012 16.7 3.2 1 23 400 423 400 423 0.98 13 19 0.012 0.82 11.0 0.3 1 21 441 461 441 462 0.93 14 19 0.0065 0.44 11.8 4.8 1 23 470 493 462 493 0.89 15 19 0.00014 0.0097 17.0 0.8 1 21 523 543 523 544 0.96 16 19 0.0018 0.12 13.6 1.9 1 23 552 575 552 575 0.95 17 19 6.1e-05 0.0042 18.2 2.5 2 21 597 616 597 617 0.95 18 19 6.8e-06 0.00047 21.2 1.4 2 21 633 652 633 653 0.95 19 19 1.7e-06 0.00012 23.1 2.2 2 23 662 684 661 684 0.95
Sequence Information
- Coding Sequence
- ATGAAGCGCTACAAGCGTAAGGGACATCTGGCGAGGCACATCAAGTACGAGTGCTACCAGGAGCCGCAATTTCAGTGCGGACACTGCGCTTACAAGTATAAAGCCTTCGCTTGCCACAGCTGCGGGAGGCGCTACAAGCGCAAGGGCGCCCTCTCCAAACACGTCAAATACGAGTGCGACCAGGAACCGCAATTCCAGTGCGGCTACTGCCCGCACAAATCGAAATTACGCGAGAATCTGAAGAAGCACATCACCAAACCGCCGTTCTTGTGCCCTAATTGCGGCAGAAGTTACATGCACAAGAACACCTTAAGGAGGCACCTGAAACACGAATGCCAGCAGGAACCTCAGCACCAGTGCCCTTACTGCGTGTACAAGTCCAAGATATTAGGGAACGTCAAGAGGCATATAACGAGAAAACATCCCGAACATTTCATATGTTTGACGTGCAATTCCCGGTACAGCTTCAAAGGCAACCTGAACAGGCACGTCAAATACGAATGCGGATCTGTTAGGAGGTTCGAGTGTTCGACCTGCCATCGTCaggataaaataatttgcgGGAAGTGCGGGAAGGTGTACAAATACAAGAGTTCGTTGTACAAGCACCTGAAATGGGAATGCGGCGTAGAGGCAAAGTTCAAGTGCAGGTTTTGCCCGTACACCTGCAAGCAGAAGATAAACCTAGTGAAACACTTACCGAGGCATGCACCCCAGCTAGGAAACTATTGTTTCTACTTGTTTGTAGGACCGGGCAAAATAGTTTGCACGCGTTGCGGCAAGTTGTACAAACACAAAAGCTCCCTGTACAAGCACCTGAAATGGGAGTGCGGGGTGGAGTCGCAGTTCAAGTGCTTCATGTGCTCGTACAGCTGCAAGCAGAAGATCAGTCTCATAAGCCACATGAACTTCAAGCACAGGATCAGCAAGGCCATCACCGAGATGCAGATCAACGGAACTCGGTTTTGTGTTTTAGGAACGGGATTCCAGTGTCCGACTTGCTACAAGAGGTACAAGAACTTGAGGACTTTAAAGACGCACTTGTACCAGGACTGCGCTCAAAACAATAAGAAGCTTTTACGGTGCGACAACTGCGACTATTACTGCAAGAGGAAGTGCGAGGCCTGCTCCAAGACGTACCAAGCCTACGCGTCCTTCTGGAGGCACAGGAAACACGAATGCCTGCAGCCCAAGAACTTCCAGTGCGTCTACTGCAAACGGTACTTCAGACAAAGGTACGACGTCAAGAAGCACGTCAGGAGTTTACACCCAGAAAAAACGGAGGAGTTCGAGGATGTGTTCAGGAATTgTTGCGATCGTTACACGTGCGACGTTTGCGGTAAGTCGTACCTAGCCCATTCCTCCTTGGTGCGACACGTGAAGTACGAGTGCAGCCAACCGAAGAACTTCCACTGCATCTACTGCAGGAAGAGCTTCCGTCAAAAGTACGACATCAAGAAGCACGTAAGGAACTTACACCCTTTGAACGTGAAAGAATTCGAAGTTATCTTCAAGCAGAGCGATTTGATACGAAAGGACCTGGTGTCGTTTTTAGGTTCTGTCCGTTTCATGTGCGGCAGGTGCGGCAAGTACTACGTGCAGAAATCGACGCTGTACAGGCACATCAGGTACGAGTGCTGCAAGGAGAACCAGTTCAAGTGCCCTTACTGCAAAAAGACGGCCAGGCAGAAGTACGACATCAAACTGCACGTGTACAAGCTGCACGCAGAGATGAGACATCAATTCGACACCTTGTACAAGAAACTCAGGTCCTCGTCCGGGCAGCCCACTTGTCCCACCTGCAACCGCACGTACAAGCACAAGAGGAACCTCTGGAGACACCAAAAATACGAATGCGGGGTGGAACCGACCCTGTTCTCCCCTGGCGAGCCGGCCGTGTGTCCGGATTGCAACAGAACCTACAAGCACAGGAAGAACCTGATACGGCACCAAAGATACGAGTGCGGGGTGGAACCCACCCTCAGCTGCGAGGTGTGCGGGAAGATATTCCGGTACAAGTCCCACTTGCAGACGCACAGGAGGAACATCCACAACGTCaattaa
- Protein Sequence
- MKRYKRKGHLARHIKYECYQEPQFQCGHCAYKYKAFACHSCGRRYKRKGALSKHVKYECDQEPQFQCGYCPHKSKLRENLKKHITKPPFLCPNCGRSYMHKNTLRRHLKHECQQEPQHQCPYCVYKSKILGNVKRHITRKHPEHFICLTCNSRYSFKGNLNRHVKYECGSVRRFECSTCHRQDKIICGKCGKVYKYKSSLYKHLKWECGVEAKFKCRFCPYTCKQKINLVKHLPRHAPQLGNYCFYLFVGPGKIVCTRCGKLYKHKSSLYKHLKWECGVESQFKCFMCSYSCKQKISLISHMNFKHRISKAITEMQINGTRFCVLGTGFQCPTCYKRYKNLRTLKTHLYQDCAQNNKKLLRCDNCDYYCKRKCEACSKTYQAYASFWRHRKHECLQPKNFQCVYCKRYFRQRYDVKKHVRSLHPEKTEEFEDVFRNCCDRYTCDVCGKSYLAHSSLVRHVKYECSQPKNFHCIYCRKSFRQKYDIKKHVRNLHPLNVKEFEVIFKQSDLIRKDLVSFLGSVRFMCGRCGKYYVQKSTLYRHIRYECCKENQFKCPYCKKTARQKYDIKLHVYKLHAEMRHQFDTLYKKLRSSSGQPTCPTCNRTYKHKRNLWRHQKYECGVEPTLFSPGEPAVCPDCNRTYKHRKNLIRHQRYECGVEPTLSCEVCGKIFRYKSHLQTHRRNIHNVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -