Eads027029.2
Basic Information
- Insect
- Exocentrus adspersus
- Gene Symbol
- -
- Assembly
- GCA_029955175.1
- Location
- JANEYG010000602.1:14657-17446[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.00014 0.0098 17.0 2.8 1 23 211 233 211 233 0.98 2 22 2.3 1.6e+02 3.8 0.6 11 23 252 264 243 264 0.90 3 22 3.3e-06 0.00023 22.2 2.3 1 23 273 295 273 295 0.98 4 22 0.0012 0.079 14.2 3.9 1 23 304 326 304 326 0.98 5 22 0.0084 0.57 11.5 0.4 1 23 335 357 335 357 0.97 6 22 0.0073 0.5 11.6 1.0 1 23 366 388 366 388 0.97 7 22 0.0014 0.096 13.9 1.1 1 23 397 419 397 419 0.97 8 22 0.00046 0.032 15.4 2.0 1 23 428 450 428 450 0.98 9 22 0.029 2 9.8 0.3 1 23 459 481 459 481 0.97 10 22 0.015 1 10.6 5.3 1 23 490 512 490 512 0.98 11 22 0.0012 0.083 14.1 2.7 1 23 521 543 521 543 0.96 12 22 0.0082 0.56 11.5 0.5 1 23 552 574 552 574 0.97 13 22 0.0073 0.5 11.6 1.0 1 23 583 605 583 605 0.97 14 22 0.0053 0.36 12.1 3.4 1 23 614 636 614 636 0.98 15 22 0.0053 0.36 12.1 0.4 1 23 645 667 645 667 0.97 16 22 5.4e-05 0.0037 18.3 1.7 1 23 676 698 676 698 0.98 17 22 0.029 2 9.8 0.3 1 23 707 729 707 729 0.97 18 22 0.015 1 10.6 5.3 1 23 738 760 738 760 0.98 19 22 0.00098 0.067 14.4 2.8 1 23 769 791 769 791 0.96 20 22 0.0082 0.56 11.5 0.5 1 23 800 822 800 822 0.97 21 22 0.0013 0.086 14.0 3.4 1 23 831 853 831 853 0.98 22 22 0.00028 0.019 16.1 1.8 1 23 862 884 862 884 0.98
Sequence Information
- Coding Sequence
- ATGTTTGAATTCAAATCGGCATGTTTGTATGTAGAAGACTTTATTACTCCGTTCGTAAATGCAGAAGAGAACCGAATCGACCTAAAGCAAATATATTTAAGGGAAAGAGGTAGCCAAGGACTCATCGATGCTTTACATGGTCGGAACTTGTGCAGACTCTGCATGAGTGTGGCGGGTCATGGATCCGTATATTTAGATGGAAGTTATTCAGACCACGACATAAAGCATGTGAGGGATACAATCCAACGATGCATCCCCGAAGTGAATGTAAACAACACACGAAATGCAGTCGTTTGTAAAGTTTGTGTCAGTTGCCTCAAGAACTACCGTGAATTTATGGACGGTTGTTTACAAAcggaaaagaaaatagaaCAGTATTGTCGTGAAAATGATATCGAGCAAAATGAGCGTATAACCTTAGCTGAAGTGTTAGAATCTACTAATAAGGAGAGTTCGATTTGTGAAGGTCAAAACTTAAACTTGAGTTATTCACcgcttaaattatttgttaatcGAAAAGATTCTGGAAATCACAATTCAGATACTGCTGATTTTCATGAAAATGTAGGACATGGTGGATCAGTCAGTACCTCTGAATCATCATCAGTTCATCCTTCAGATTTAAAGTGGTACACTTGCGATTCGTGTAAttataaatcaagtaaaaagCGTAATTTGAAGCGGCATATGTTGGTTCATAAAAACGTTTTagaagtaaatttatttaagtgtGGTACGAATGATCTTCAGTCAAAACATAAAAGCAGTTTAACAAGTCATGTTTTAACCCATGAAAATCCTTCGGATATAAAGTGGTTTCAATGTAATTTGTGTGATTATAGGTCAAAACGTAAGAGCAATTTAAAAACCCACATGTTGATCCATAAGGATCCCTcagaaattgaatggttcaaatgccatttgtgcgattttaaaacaaagcgTAAAGAGGTTTTGAAGACTCATATGTTGATCCACAAGGACCCATCGAAAATTGAATGGTACAAATGTCGTTTATgtgattttaaagcaaaaCAGAAAGCCAATTTGGGAAGGCATGCATTGATCCATAAAAACCCCttggaaattgaatggttcaaatgtcatttgtgtgaTTTTAAGGCAAAACAGAAAGCCGATTTGGGGAGGCATGCATTGATCCATAAAAACCCCttggaaattgaatggttcaaatgtcatttgtgtgaTTTTACGGCAAAACAGAAAGCCAATTTGGGAAGGCATGCATTGATCCATAAAAACCCCttggaaattgaatggttcaaatgtaATTTGTGTGACTTTAAAACAAAGCGTAAAGAGGCTTTGAAGACTCATACGTTGATCCACAAAGACCCATctgaaattgaatggttcaaatgtcgTTTATGTGATTTTAAGGCAAAACAGAAAGCCGATTTGGGGAGGCATGCATTGATCCATAAAAACCCctcggaaattgaatggttcaaatgtcatttgtgtgaTTTTAAGGCAAAACATAAAGGGTCTTTGAAGACTCATACGTTGATCCACAAAGACTCATctgaaattgaatggttcaaatgtcatttgtgtgaCTTGAAAACAAAGCGTAAAGAGGCTTTGAAGACTCATACGGTGATCCACAAAGACCCATctgaaattgaatggttcaaatgtcgTTTATGTGATTTTAAGGCAAGACGGAAAGCCAATTTGGGGAGGCATGCATTGATCCATAAAAACCCCttggaaattgaatggttcaaatgtcatttgtgtgaTTTTAAGGCAAAACAGAAAGCCGATTTGGGGAGGCATGCATTGATCCATAAAAACCCctcggaaattgaatggttcaaatgtcatttgtgtgaTTTTAAAGCCAAACAGAAAGGCACTTTGAAGACTCATACGTTGATCCACAAAGACCCatcggaaattgaatggttcaaatgtcgTTTATGTGATTTTACGGCAAAACAGAAAGCCAATTTGGGAAGGCATGCATTAATCCATAAAAACCCCttggaaattgaatggttcaaatgtaATTTGTGTGACTTTAAAACAAAGCGTAAAGAGGCTTTGAAGACTCATATGTTGATCCACAAAGACCCATctgaaattgaatggttcaaatgtcgTTTATGTGATTTTAAGGCAAAACAGAAAGCCGATTTGGGGAGGCATGCATTGATCCATAAAAACCCctcggaaattgaatggttcaaatgtcatttgtgtgaTTTTAAGGCAAAACATAAAGGGTCTTTGAAGACTCATACGTTGATCCACAAAGACTCATctgaaattgaatggttcaaatgtcatttgtgtgaCATGAAAACAAAGCGTAAAGAGGCTTTGAAGACTCATACGGTGATCCACAAAGACCCATctgaaattgaatggttcaaatgtcgTTTATGTGATTTTAAGGCAAGACGGAAAGCCAATTTGGGGAGGCATGCATTGATCCATAAAAACCCCttggaaattgaatggttcaaatgtcatttgtgtgaCTTTAAAACAAAGCGTAAAGAGGGTCTAAAGATTCATAGGCTGATCCATAAAAACCGCTCGGAAATTCAATGGTTTAAATGTGATTCGTGTAATTTTAAGTCAAAACAGAAATCAAGTTTGGAGAAACATATATTGGTCCATAGAAGTCGCTAA
- Protein Sequence
- MFEFKSACLYVEDFITPFVNAEENRIDLKQIYLRERGSQGLIDALHGRNLCRLCMSVAGHGSVYLDGSYSDHDIKHVRDTIQRCIPEVNVNNTRNAVVCKVCVSCLKNYREFMDGCLQTEKKIEQYCRENDIEQNERITLAEVLESTNKESSICEGQNLNLSYSPLKLFVNRKDSGNHNSDTADFHENVGHGGSVSTSESSSVHPSDLKWYTCDSCNYKSSKKRNLKRHMLVHKNVLEVNLFKCGTNDLQSKHKSSLTSHVLTHENPSDIKWFQCNLCDYRSKRKSNLKTHMLIHKDPSEIEWFKCHLCDFKTKRKEVLKTHMLIHKDPSKIEWYKCRLCDFKAKQKANLGRHALIHKNPLEIEWFKCHLCDFKAKQKADLGRHALIHKNPLEIEWFKCHLCDFTAKQKANLGRHALIHKNPLEIEWFKCNLCDFKTKRKEALKTHTLIHKDPSEIEWFKCRLCDFKAKQKADLGRHALIHKNPSEIEWFKCHLCDFKAKHKGSLKTHTLIHKDSSEIEWFKCHLCDLKTKRKEALKTHTVIHKDPSEIEWFKCRLCDFKARRKANLGRHALIHKNPLEIEWFKCHLCDFKAKQKADLGRHALIHKNPSEIEWFKCHLCDFKAKQKGTLKTHTLIHKDPSEIEWFKCRLCDFTAKQKANLGRHALIHKNPLEIEWFKCNLCDFKTKRKEALKTHMLIHKDPSEIEWFKCRLCDFKAKQKADLGRHALIHKNPSEIEWFKCHLCDFKAKHKGSLKTHTLIHKDSSEIEWFKCHLCDMKTKRKEALKTHTVIHKDPSEIEWFKCRLCDFKARRKANLGRHALIHKNPLEIEWFKCHLCDFKTKRKEGLKIHRLIHKNRSEIQWFKCDSCNFKSKQKSSLEKHILVHRSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -