Eisc016639.1
Basic Information
- Insect
- Exephanes ischioxanthus
- Gene Symbol
- -
- Assembly
- GCA_958510785.1
- Location
- OY294023.1:9763536-9766343[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00055 0.046 14.5 0.3 2 23 281 302 280 302 0.96 2 9 0.01 0.85 10.6 0.1 1 22 308 329 308 331 0.88 3 9 0.00018 0.015 16.1 0.5 1 23 406 428 406 428 0.98 4 9 9.2e-05 0.0078 17.0 1.3 1 23 434 456 434 456 0.96 5 9 4.1e-06 0.00035 21.2 1.9 1 20 462 481 462 484 0.93 6 9 0.00035 0.029 15.1 3.8 1 23 490 512 490 512 0.98 7 9 0.0002 0.017 15.9 3.8 1 23 518 540 518 540 0.99 8 9 1.1e-06 9.1e-05 23.0 0.4 1 23 546 568 546 568 0.98 9 9 0.00085 0.071 13.9 3.0 1 23 583 605 583 606 0.96
Sequence Information
- Coding Sequence
- ATGTCCGTCTCGCATGTGCCGGAGTCTTTCTGCCTGGTGTGCGAGACGGTTCTGGACTCGTCCTCGAGCACGAACATCTTCTACTCTTCGCTGCCGAGATACGGCGAGTTGCTCGCGAGTTTCGTTCTCAGGGTTTTGCGCCCGGTCGCCTCGGACCTCCGCAGCTCTTACATATGCTCGCGATGTCACGATCTCTTCCAGATGCTCGAGCAGGCGCAGTGGACGGTCTCGAGCGTCAAGTCCGAGATCCTCAAGGTCTATCATTCCAGAGTTACCGACGGAGCTTCGACCGAGCGAAAATCGGTGCATCCCGTGTCGCACATATTGCCGGACGACGACATATTCGTCGACGATCGTTCGGTGGTTGGAAAAAACATCGTCGACGACGGAAACTTCGTCGATATTCACGGACTGAGGAGTCTGAACGTCGCGCGAAACGAATTCGATAGTTTGAGCATGGTGATCGATAATCTGAACGAGGCGAGCTGCGGCGTCGACGGCAAGAGGGAGATCGAAGCTTCCATGAGCCTCGACGGGCAGCACAACGGTTACAAGCTCTCTGATCTCAAGGTCGAAGCGCACACGGAAACGGAGgagggaataataaaaaattgccgcAACGACGCGCCGGTGCTCGTGGTCGATGTTTCGAGccgatcgacgaaaaattctgcGCCCGAGGAGCGCGAAGATGCCAGCGATATAATTAGCCAAATTTCCAACGAATTGCAGACAAATTCGAGGCACGAGCAGCGTGGAAACGATACGATCGACGATATCTCGAGCTCGATCGCCCAAAATTTGGATCCCCCCAACGACGAGAGGTCTCTGTACACGCTGCAGTGCGGCCTGTGCGGTCGTTTGTTCCGCTCGGCGACGGAGCTGCAGTCGCACTCGCTCAGGCACGGAGGATCGCTTCCGTACAAGTGTCGCGAGTGCGACGAGAGATTCGCCGATGTTTCGGCGGCGACCAATCACTCGTCGGAGGCTCACGAGTCGGTGAAAAATTGCGTGTTCGTCTCGACCGAGCCGGCGGACAACGAGATCGTTGATTTTTCGAAGGAGGACTGGATCGTGCCGGAGGATTTTGGGAAAAACGCTCTGGAAGATTCGACCGGAAGGGCGGACGGCGACGATGCCGGAAGCGACAAGAGGGCCCAGCGAGCCTCGTGGAAGTCCGGCAGGATCTCGAAGTACAGTCAGAAACCGCTGAAATATCCGTGCTCGACTTGCGGGAAAAAATGGCGGACCTCGGCGGAACTGAAGACTCACGTCAAGTCGCACTCGAATCTTCGGCCGTACATGTGCGAGAAATGCGGACAGGCGTACAAACACAAACACGCGCTCGAGATACACGTGGGAATGCACAACGGTATCAGCCCGTTTCAGTGCAGCGTCTGCAACAAGTGCTTCACGCAGAAGGGCGCCCTCATGAGACACCTGCCCATGCACACCGGCGAAACACCTTATCAGTGCGAACTCTGCGGCAAACGATTCGTTCATCACACGTCCTACAACATGCACGCCCTCTCGCATACGGGAAAGAAATCTTATCAGTGCCATGTGTGCGACTTGTCCCTATTGTCAACGTCTCACTTAAAACGGCACATGCGAGTTCACACGGGTGAAAAACCATACAGTTGCGCGCTGTGCGGTAAGAGCTTCGCGGAAAGATACAATTTGTTTGCCCATCAGAAGATTCACGATCCCGTTGAGATAATGGCGAAAGCGGCTAAGAAGATGACTTACAAGTGCGAGCTGTGCgacgaatttttcgataaaaagcAAAAGCTCGAGGATCACACGAAGGAGCATCATAATCACAATCATAATCACTGCAGCTCGAACAACGATCCGGCGAACGGAAGTAAATGGATCGGTCACACGGTCGAGGTGGAAACGCCGGCGAGAAGAAACGACGTTATTATGGAACAATCGTGGCAGGATCTCGATTACTCAAAGTTACAAAACGTGGGCCTCAAAGCCGCACAAAACGACAATCAATTGTCACAATTGTCGCACGATTCGATAGCGATTCTGATGTCGCAGACTAACAACAACAAGGGAATGACCGTTGTTGCACAAACGACCGATACGACCGTTAATACGGACATCGATCGAACACAAATCTGA
- Protein Sequence
- MSVSHVPESFCLVCETVLDSSSSTNIFYSSLPRYGELLASFVLRVLRPVASDLRSSYICSRCHDLFQMLEQAQWTVSSVKSEILKVYHSRVTDGASTERKSVHPVSHILPDDDIFVDDRSVVGKNIVDDGNFVDIHGLRSLNVARNEFDSLSMVIDNLNEASCGVDGKREIEASMSLDGQHNGYKLSDLKVEAHTETEEGIIKNCRNDAPVLVVDVSSRSTKNSAPEEREDASDIISQISNELQTNSRHEQRGNDTIDDISSSIAQNLDPPNDERSLYTLQCGLCGRLFRSATELQSHSLRHGGSLPYKCRECDERFADVSAATNHSSEAHESVKNCVFVSTEPADNEIVDFSKEDWIVPEDFGKNALEDSTGRADGDDAGSDKRAQRASWKSGRISKYSQKPLKYPCSTCGKKWRTSAELKTHVKSHSNLRPYMCEKCGQAYKHKHALEIHVGMHNGISPFQCSVCNKCFTQKGALMRHLPMHTGETPYQCELCGKRFVHHTSYNMHALSHTGKKSYQCHVCDLSLLSTSHLKRHMRVHTGEKPYSCALCGKSFAERYNLFAHQKIHDPVEIMAKAAKKMTYKCELCDEFFDKKQKLEDHTKEHHNHNHNHCSSNNDPANGSKWIGHTVEVETPARRNDVIMEQSWQDLDYSKLQNVGLKAAQNDNQLSQLSHDSIAILMSQTNNNKGMTVVAQTTDTTVNTDIDRTQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01364887;
- 90% Identity
- iTF_01364887;
- 80% Identity
- -