Basic Information

Insect: Exephanes ischioxanthus
Gene Symbol: LARS1
Assembly: GCA_958510785.1
Location: OY294024.1:9016671-9021389[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.0074 0.63 11.0 0.9 2 23 391 412 391 412 0.96

2 19 2.6e-05 0.0022 18.7 0.8 1 23 422 444 422 444 0.99

3 19 0.016 1.3 9.9 1.4 1 14 450 463 450 466 0.91

4 19 0.32 27 5.8 0.1 3 23 485 505 483 505 0.87

5 19 0.044 3.7 8.5 3.3 1 23 511 533 511 533 0.82

6 19 0.013 1.1 10.2 5.2 1 23 539 561 539 561 0.97

7 19 0.0086 0.73 10.8 1.2 1 23 567 589 567 589 0.98

8 19 6.6e-06 0.00056 20.6 1.6 1 23 595 618 595 618 0.98

9 19 0.0026 0.22 12.4 2.7 1 23 688 710 688 711 0.95

10 19 0.00038 0.032 15.0 0.9 1 23 744 766 744 766 0.98

11 19 0.00018 0.015 16.0 0.8 1 23 772 795 772 795 0.97

12 19 0.63 53 4.9 0.3 9 23 797 811 796 811 0.95

13 19 0.00099 0.084 13.7 0.4 1 23 817 839 817 839 0.97

14 19 0.00014 0.012 16.4 2.3 1 23 845 867 845 867 0.96

15 19 0.0012 0.099 13.5 2.6 1 23 945 968 945 968 0.93

16 19 0.16 14 6.7 0.4 1 23 974 996 974 996 0.97

17 19 6.1e-05 0.0052 17.5 4.4 1 23 1002 1024 1002 1024 0.95

18 19 1.8e-05 0.0015 19.2 2.1 1 23 1030 1052 1030 1052 0.97

19 19 0.16 14 6.8 0.2 1 12 1058 1069 1058 1071 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.0074	0.63	11.0	0.9	2	23	391	412	391	412	0.96
2	19	2.6e-05	0.0022	18.7	0.8	1	23	422	444	422	444	0.99
3	19	0.016	1.3	9.9	1.4	1	14	450	463	450	466	0.91
4	19	0.32	27	5.8	0.1	3	23	485	505	483	505	0.87
5	19	0.044	3.7	8.5	3.3	1	23	511	533	511	533	0.82
6	19	0.013	1.1	10.2	5.2	1	23	539	561	539	561	0.97
7	19	0.0086	0.73	10.8	1.2	1	23	567	589	567	589	0.98
8	19	6.6e-06	0.00056	20.6	1.6	1	23	595	618	595	618	0.98
9	19	0.0026	0.22	12.4	2.7	1	23	688	710	688	711	0.95
10	19	0.00038	0.032	15.0	0.9	1	23	744	766	744	766	0.98
11	19	0.00018	0.015	16.0	0.8	1	23	772	795	772	795	0.97
12	19	0.63	53	4.9	0.3	9	23	797	811	796	811	0.95
13	19	0.00099	0.084	13.7	0.4	1	23	817	839	817	839	0.97
14	19	0.00014	0.012	16.4	2.3	1	23	845	867	845	867	0.96
15	19	0.0012	0.099	13.5	2.6	1	23	945	968	945	968	0.93
16	19	0.16	14	6.7	0.4	1	23	974	996	974	996	0.97
17	19	6.1e-05	0.0052	17.5	4.4	1	23	1002	1024	1002	1024	0.95
18	19	1.8e-05	0.0015	19.2	2.1	1	23	1030	1052	1030	1052	0.97
19	19	0.16	14	6.8	0.2	1	12	1058	1069	1058	1071	0.91

Sequence Information

Coding Sequence: ATGGGATCTATCGCATGGGCTTGCGATACGTCCATAGGATGCAATTGGTTCATCACCTGGTTTTACAATTCGGCTGACGATAGTTTCAACGaggaggagaccgtcgaggaCGACTTTGGCGAGGTGGAGACCGTCGAGAAGaatttcgacgaggaggataCCAGAAAAACGCCGTATACATCTCGTTTCAATGTTGCGCACTCTTTCCCAGGAACGAAGTTCCCGTGGGACGAGCAGTGGCTTATCCAATCTCTGTCGGACTCTACAATCTATATGGCTTATTACACCGTTGCGCACTTGATTCAGAGAGGAAACTTCAAAGCCGATAAACCGAACGTTCTTGGCATCAAAGCCGAGCAGATGACAACAGAAATTTGGGACTACGTCTTCTCCGAAATCACCAAGCTTCCCAAGACAGCGATAAAGAAGGAGGCGCTGGAGCTTATGCACGACACTTTGCCCGTACAGCTCTGCTACCAGTGCGCAGCAACGATACTGGCATGGCACGAGTTACTCGAAGGCTGCATGGAAGCTGAGAAAAGACTCGTGCGGATGGAATCTGCGCTCAAAGATAAGGAAGAGATGCAGCTGAAGTCTACAGAAATTCCTAGTTCTAACGGGCATGCAGGAATAATTATTGCAGGCAAAGAGCTTGTCGACGATCCGGATCCAATTGCAACTCAAGGGGAGGAACAGATATGCTCAATGGAAAAATTGCAAGAGCCAAGCGAGACTGTTGAGCATGGTCCTAGTCAGGAAAACGAAGAGAGGTCCGGCAAATCGAAGAAGCCATTTAGGCTATTCCTTGACACGCAAAGTATATATCGGAAGTCGAGAAGAAAAGTTAAGACCGAAGTTAGAGACGAGAAGCGTGCGACGAGAGACAGTTCGGACGCAATATGGAGGGACGTTTTGTACGCGAGCATCGAGCATCGGTTGCCGAGCTTGGAGTCGCCGGAACATGCGAACGAGAATCTGGACTGCTGCGTCTATGATGCATCCGCGAAAGCCGAAGAAACTGAGCTCGCCTCGTCGTTAAAAATCGAGAGCACGGAGAGAGTAACATTAGCCCTGTGCGAGGAAGACATCGTGAGGCGATCGGAATATCCGTTTTACGAAGAGTCAACGCCCGGCGATGAGTCGGGTCCCGAGGAAAGAGACGGCAGAGCAAAGTGTAACGTGTGCTCTCGCGAATTTTCTCAAATAAACGATCTCCACGTTCACGCCAACGAACACAAAGATTTGCCGGAATCGCGACAGATCTATCAGTGCGTCGAGTGCGCCAAAAGTTTTCGTCTCAAGGACTCTTTCGTTCGTCACCTGCGAATTCATCGCGACGAGCGACCGTTCACTTGTCACGTTTGCGGCAAACAGTTTCGCGACTCCGGCAAACAGTTTCACGGTATCTCGAGGCATCTGAAAGACGTTCACGCGAAGCTGAAGAACTTCCCTTGCGACATTTGGGGAAAGAGTTTCTCGTCGAAGGCAACGCGCGACGATCATCGACGAACCCACACGGGCGAGAGGCCTTACGTTTGCGATACTTGCAACAAATCATTCAAATCCAAAGCCTGCCCGAACAGTCACAACAAGCTTCACACGAACGAGTTTCCACATCGGTGCGCCTACTGCAGCAAAAAGTTCCGTCGAAGGCAGAAGATGTTCGTACACGCGACCACCCACACCGGCGAGAAAAATTACAGTTGCGACGCTTGCTACAAGCGCTTTCGCGTCAAGACCGAAGTTGTCAGGCACAAATTGACTCATTCCGACGAGAAACCCTTCGTCTGCGCCAAGTGCGGTCTCAGATTTCGTCAGAATCGTTATCTCAACAATCACATTAAAACGCGACACGTTCAGTCATCGATCCGGTGCTGCGAGAAGATTCGAAACTTCCGTCAGAAGACGGAGAGAAGCGTCCAGTGGAAAAGGCTCACTGAAACTCGCGATCGTGCCAAGATCGAGTCGTCGAAGGCAGAGGAAAACTTCGATGCGAGAGCTTCGGAAGAATCGACGAACCGGGATAAGGGGGAATCGTCGATGAAGAAAAGACTGCCTACCTATCCGTGCGCGTACTGCGACTACacaacgagaaagaaaaaattgttgaaagttCACACGAGCGAGCATCACTCGGAGATCTCGAAGACGAAGCGCGGTCGGAAACAGCGCTGCGTAGACAAGGATCTCGTCAATCGTTCGAGGATGGGGGCGAACGGTTGCATATACTATCACTGCAACGACTGCGGAAAAAATCTCTTCTCCCCTTACACCTTCGCCTGGCACGTGAGAATCCACACGGGCGAGCGGGGGTTCACTTGTCACCTGTGCGGCGCACAGTTTCGCGTTAATCAGGGACTCGCTCGTCATCTCCGGGAGACTCACgccgCCTTCAAGCAGAAAGCCTCGCTCTTCGTTCACAATCGAACTCACACGGATTTCTTCCTGTTCAAGTGCAGCTACTGCGAGCAGGGCTTTCGCACGAAACCACCGCTCGTCGTCCACGTGACGAAACACACAGGCGAGAAGCCTCACGCTTGCGACATATGCGACCGAGCTTTTCGCATAAAGTACGAACTGAAGCATCACCGTCTGATACACTTCAACGAGAAACCCTGGCAGTGCACCGACTGCGGTCTGTTTCCGAACATCGATGAAACAGTAAGCGCTGCCACGAGAGAGGAAAGAATTACGCCTCTGGAAGGTACGATCGATCGAGCGAAGGATTCGAAGCCCTCGCCGCGAGCCAAACTAACGTCGGAGCAAAGGGAGGTATTGTTCCGGTCGAGGATCAACTGCAACGGCGTTGCGCGGCACACCGGCGAGAAGCCCTTCACCTGCCACGTGTGCGGCAAGAGTTTCCGTCACGGCTCGATTATCAACAGGCATCTGCGCGACGTTCACGCGGGCAGCAAGAACTTCCCGTGCGACCTCTGCGATCGTCGTCTAGGTTCCAGAACAGCTCGGGATGAGCATCGAAGAACTCACACGAACGAGAGACCGCACGTTTGCAAGACTTGCGGAAAGTCCTTCAGGCAGAAAGCGTCTCTTCACGTTCACAGGATTTTTCACACGAACAGCTACGACCACCGGTGCAACATATGCGAGAGAGCATTTAGGAGAAAGCAGGAACTCGACAAACACCAGTTGATCCACACGGGACAGAAACCGCACGAGTGCGAGATTTGCGAGAAACGCTTTCGTACGATAGGGTGCTGA
Protein Sequence: MGSIAWACDTSIGCNWFITWFYNSADDSFNEEETVEDDFGEVETVEKNFDEEDTRKTPYTSRFNVAHSFPGTKFPWDEQWLIQSLSDSTIYMAYYTVAHLIQRGNFKADKPNVLGIKAEQMTTEIWDYVFSEITKLPKTAIKKEALELMHDTLPVQLCYQCAATILAWHELLEGCMEAEKRLVRMESALKDKEEMQLKSTEIPSSNGHAGIIIAGKELVDDPDPIATQGEEQICSMEKLQEPSETVEHGPSQENEERSGKSKKPFRLFLDTQSIYRKSRRKVKTEVRDEKRATRDSSDAIWRDVLYASIEHRLPSLESPEHANENLDCCVYDASAKAEETELASSLKIESTERVTLALCEEDIVRRSEYPFYEESTPGDESGPEERDGRAKCNVCSREFSQINDLHVHANEHKDLPESRQIYQCVECAKSFRLKDSFVRHLRIHRDERPFTCHVCGKQFRDSGKQFHGISRHLKDVHAKLKNFPCDIWGKSFSSKATRDDHRRTHTGERPYVCDTCNKSFKSKACPNSHNKLHTNEFPHRCAYCSKKFRRRQKMFVHATTHTGEKNYSCDACYKRFRVKTEVVRHKLTHSDEKPFVCAKCGLRFRQNRYLNNHIKTRHVQSSIRCCEKIRNFRQKTERSVQWKRLTETRDRAKIESSKAEENFDARASEESTNRDKGESSMKKRLPTYPCAYCDYTTRKKKLLKVHTSEHHSEISKTKRGRKQRCVDKDLVNRSRMGANGCIYYHCNDCGKNLFSPYTFAWHVRIHTGERGFTCHLCGAQFRVNQGLARHLRETHAAFKQKASLFVHNRTHTDFFLFKCSYCEQGFRTKPPLVVHVTKHTGEKPHACDICDRAFRIKYELKHHRLIHFNEKPWQCTDCGLFPNIDETVSAATREERITPLEGTIDRAKDSKPSPRAKLTSEQREVLFRSRINCNGVARHTGEKPFTCHVCGKSFRHGSIINRHLRDVHAGSKNFPCDLCDRRLGSRTARDEHRRTHTNERPHVCKTCGKSFRQKASLHVHRIFHTNSYDHRCNICERAFRRKQELDKHQLIHTGQKPHECEICEKRFRTIGC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -