Eisc017749.1
Basic Information
- Insect
- Exephanes ischioxanthus
- Gene Symbol
- -
- Assembly
- GCA_958510785.1
- Location
- OY294024.1:6645934-6650047[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2e-06 0.00017 22.2 1.1 1 22 88 109 88 109 0.96 2 19 6.8e-05 0.0058 17.4 3.2 2 23 145 166 144 166 0.97 3 19 0.00032 0.027 15.3 0.1 2 23 171 192 170 192 0.97 4 19 5.4e-05 0.0046 17.7 0.5 3 23 200 220 199 220 0.98 5 19 2.9e-06 0.00025 21.7 0.4 3 23 228 248 226 248 0.97 6 19 5.5 4.7e+02 1.9 5.6 1 23 257 279 257 279 0.97 7 19 0.022 1.8 9.5 0.7 2 23 286 306 285 306 0.94 8 19 0.00024 0.02 15.7 2.8 3 23 314 334 313 334 0.98 9 19 5.2e-05 0.0044 17.7 1.5 1 21 340 360 340 360 0.96 10 19 0.0099 0.83 10.6 2.3 1 23 445 467 445 467 0.98 11 19 2.7e-05 0.0023 18.7 0.1 3 23 475 496 474 496 0.96 12 19 1.2e-05 0.001 19.8 1.2 1 23 502 524 502 524 0.97 13 19 0.084 7.1 7.6 0.2 1 23 528 550 528 550 0.97 14 19 6e-05 0.0051 17.5 2.1 3 23 558 578 556 578 0.96 15 19 4.5e-05 0.0038 17.9 0.1 1 23 584 606 584 606 0.97 16 19 1.2 98 4.0 1.1 1 23 612 634 612 634 0.95 17 19 9.5e-07 8e-05 23.2 0.1 3 23 642 662 640 662 0.97 18 19 4.5e-07 3.8e-05 24.2 0.6 1 23 668 690 668 690 0.98 19 19 2.4e-07 2e-05 25.1 1.3 1 23 696 718 696 718 0.98
Sequence Information
- Coding Sequence
- ATGTTTATGCTGAAGCGAGGGAACCTGCGGAGTGCCAGGAAGTCGCGTCCATCGTCGGGTTCGACTCGATTGAACGGGAGGGACGAGTTCGACGACAGAGTATCGGAGGTAGTCGATTGTATAATAAACGCCGAGGTAAAGGTCTGCGAGCGGGATCGGCGAACGGAGCAGCACAGGTGCGAAGACGCCCTGCTGCTGCACAGGACTGAGCAGGAGATTCGTCGGGTACGGCGGAATATTCGCGAGAGGAGACTGGCAGATTTTTCATGTCCGTATTGCGGCGAGAAATTCACGAAGAACACGTCGCTTCTGAGACACCAGAGAAAACGTTGCAGAGAGTACAGGGAGGTCATAAAATTACATCGGCCCTTCGTGCAGGAAGCCGAGACCGACCAGGTCAGGGAGGACAAACTCTACCCGGCCGGGCCCGTCGAATGCGACATTTGTCACAAGAAATTCAAGAAGAAGAGATACATCAGAGTCCACATGCGTCTTCACGGATCGCCGAGCGTGTGCGATATATGCGGTGCCGTCCTCGCGTCCGCCTGGTGCCTGGAGCAGCACATGAGGCGTCACAGAGCTGATTACTCGGTGTTCTGCGAGGTGTGCAACAAGGGTTTTTACTACCGAGCGACGCTGAACGTTCACATGACGACGCACACCAAGGAGAAGACTATGGCGTGCGAGGTCTGCAAGAGAGCGTTCGCCAACCGGGTATATCTTCGGAGTCACATGAGGACTCATCTCGACCcggagacgagaaaaaaattcaagtgcGAACTGTGCAGCTTCGAGACCTTCTACAGTTACTGCTACAAGGAGCACAGGGACACTCACACCGGCGAGGGAAGGATCGAATGCCAGATATGCGGGAAATTCATACGACGGCAGTACATGAAGACCCACGTAAGGATGCACACCGGCGAGAAACCGGAGATATGCGAATTCTGCGGAAAACGATTCCTGTCGAGAAAATACCTGACCAAGCATCGCCGCACCCACACCGGCGAGAGACCTTACAGGTGCTTCATGTGCGACAACAGCTTCACCCAGCGATCGAGCCTCATGAAACATCTCAAGTGTGCACCAGTGGACGAAGAGTCGACGAAATTGGAGCCGATCGAGCTCGCCGAAGAGTACGTTATAGGGGCCGAGgaggatgacgacgatgagtACACGGAGGAGTATCGGAGCTTCGAGGGCCAAGAGGTTGTCACGGAGACACTGGAGTACACGGTGGACGTCGAAGATATCAAGACCAAAACGCGGAAGGAAAAAACGCGGAAACGTGCTCGCTGCAGGTCGGAGAAACCGAGAAAATCGCAAAAGCAGTACGTCTGCGACACGTGCGGCAAGACAATGAGAAAGAAGCTTCAGTATCTGAAGCATCGTCAGAACCACGAGAGGAAGCCGGGTGGTCCGTGCGAGGAGTGcgacaaatttttcatcgacgagGAGAAACTTCGGAAGCACATAATCAAGGCTCACCAGGAGGACAAGCCGTTTCCGTGTCTCCTATGCGGGAAGTCCTTCAAGACCGAGGAGTTCCTCAAGACCCATCTTAAGCagcacaacaaaaaattcgtctGCGACATATGCGGTGTGTCAAAGGTGTCCGGCTACGATCTGAGGCTCCACAAGAAGAAGCACAATCAGGAGTACGTTACCCACTGCGAGATATGCAGCAAGGGATTTTACACGAATCAAACTCTTGAGCGTCATCTGCTGACTCACACCGGCGAGAAACCGTTCGCCTGCACGATATGCAACACACCGTACGCGAGCGCTGCGTATCTCAACATGCACATGAAGTCGCACGGCCAGCGTGAGAAGCACAAATGCAGCTTGTGCAGTTTCGAGAGTTACTGGAAGGCCGCTCTCAAGGTACACCTCAAGATACACAGCGGCGAGAATCAGATAGCTTGCGAGATATGTGGCAAATCGGTCTCGAGCAAGACCTATCTGCAGATACACATGAGGATACACTCTGGCGAGAAGCCCCACGTCTGCGAGATTTGCGGCAAGGCATTCAGCGTCAGAAAATATCTGATCGTTCATCTGAGGACTCATACCGGCGAGCGACCTTACGAGTGCAAGATATGCCAGAAAACATTCACCCAGCAGGGATCTCTGAATTCTCACGTCAAGTCGCACAACGAgacgaaatga
- Protein Sequence
- MFMLKRGNLRSARKSRPSSGSTRLNGRDEFDDRVSEVVDCIINAEVKVCERDRRTEQHRCEDALLLHRTEQEIRRVRRNIRERRLADFSCPYCGEKFTKNTSLLRHQRKRCREYREVIKLHRPFVQEAETDQVREDKLYPAGPVECDICHKKFKKKRYIRVHMRLHGSPSVCDICGAVLASAWCLEQHMRRHRADYSVFCEVCNKGFYYRATLNVHMTTHTKEKTMACEVCKRAFANRVYLRSHMRTHLDPETRKKFKCELCSFETFYSYCYKEHRDTHTGEGRIECQICGKFIRRQYMKTHVRMHTGEKPEICEFCGKRFLSRKYLTKHRRTHTGERPYRCFMCDNSFTQRSSLMKHLKCAPVDEESTKLEPIELAEEYVIGAEEDDDDEYTEEYRSFEGQEVVTETLEYTVDVEDIKTKTRKEKTRKRARCRSEKPRKSQKQYVCDTCGKTMRKKLQYLKHRQNHERKPGGPCEECDKFFIDEEKLRKHIIKAHQEDKPFPCLLCGKSFKTEEFLKTHLKQHNKKFVCDICGVSKVSGYDLRLHKKKHNQEYVTHCEICSKGFYTNQTLERHLLTHTGEKPFACTICNTPYASAAYLNMHMKSHGQREKHKCSLCSFESYWKAALKVHLKIHSGENQIACEICGKSVSSKTYLQIHMRIHSGEKPHVCEICGKAFSVRKYLIVHLRTHTGERPYECKICQKTFTQQGSLNSHVKSHNETK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00905570;
- 90% Identity
- iTF_00905570;
- 80% Identity
- -