Epin002980.1
Basic Information
- Insect
- Euzophera pinguis
- Gene Symbol
- Znf574
- Assembly
- GCA_947363495.1
- Location
- OX376182.1:1788154-1802391[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.079 6.2 8.1 0.9 2 23 313 335 312 335 0.93 2 14 0.0011 0.09 13.9 1.7 1 23 341 363 341 363 0.97 3 14 0.0086 0.67 11.1 4.6 1 23 367 389 367 389 0.98 4 14 0.014 1.1 10.5 2.0 2 23 393 415 392 415 0.96 5 14 3.2 2.5e+02 3.0 0.1 2 23 421 443 421 443 0.89 6 14 0.35 27 6.1 0.6 1 19 448 466 448 468 0.96 7 14 0.5 39 5.6 4.8 3 23 477 498 475 498 0.89 8 14 0.02 1.5 10.0 0.3 1 21 509 529 509 530 0.93 9 14 0.049 3.9 8.7 2.0 3 23 537 557 535 557 0.95 10 14 0.0044 0.34 12.0 0.7 1 20 564 583 564 584 0.96 11 14 0.00095 0.074 14.1 0.1 2 23 634 655 634 655 0.97 12 14 5.4e-05 0.0042 18.1 3.6 1 23 660 682 660 682 0.98 13 14 0.0013 0.1 13.7 0.9 2 23 689 710 688 710 0.97 14 14 0.001 0.078 14.1 0.4 1 23 715 738 715 738 0.94
Sequence Information
- Coding Sequence
- ATGTCGGTAAAGTTGACTGACGCGAAGAGTTGGGCTAAAGTGCGCGCTTGTCGTGCTTGCCTAGCTACCGACGTCAATTTGTTTGATATCCGTAAGAATTCACTCGCAGAGAATTATATGCTCATGGCTGGTATATCTGTCCAGGATTGTTTTCCCCAGTTTTTATGCTTGTTCTGTGTTGATTCCGTGAAGAAATTTGTAAACTTTAGGAAGAAATGTAGAAAAGCGTATACTGTGCTTGTAGGTATTCACAATAAAGGAAGACCGGTATACACAGCGCATATCCGTGACGTCCACTATTCACACAAAGACCTACAAATACCGTATTCAATATCACAAGTGAAAATAGAAGAATTAGGTAACACAAAAGTACAAGAGTCACATAATATAAATGATTTAAAGGATGAACAATCAGCAAATTCAGATGTATTCGACACATATTTCGATAACACAGAATCTGGTGATCAAAATGACAGCGATGACGAATTTGAACATGAAAGTTCAAACGAACAACTTGCCAATTTAAATGAAACAGAAATTGATAGAGAAAATAATGAAACCGATAACACAAAAAACGTTAAAGTTTTTACGATTGGTGATATTATAGACGCAGAGGGCGAAGACTTAGAATACATTGAAAACAAATGGTTGAAAGGCGAATTAGATATTGAATCTCTTGCAAATAAACCGTTAAATCAAGTTATACCTAAAAGGCCAGACACAGAAGAACTGACAGATATGATTGAGTTCTTAGATATACCAGAGTTAGAAAATTTACCTCTACCTGAGAACCGTGTATTTGTAACATTTCGAAAGGAAATAACAAATGTAGATTATGCTGTATTAGCACACAAATACGATTTTCGAGTAAAATTTTTGACTAAACAAGAGCAGATTGATGAACTTGAAGAGAGTAAGAGATCACATAGAAAAACAACATGTAAAATATGTGGTTTAGATTATTCATATCGAAAGGGACTTGTTTGTCATATGAAAGCAGCACATGATGCGAATAATGAACATATTTGCGAGCTGTGCAAAGCGAGGTTTAAGGAAAGGCGTTCTCTAGTGGCTCACCTGAGAAAACATGCAGTTACATTTTATTGTAGAATTTGTAATTACAAGACAAAGTTTCAGATGGACTTGAAGAGACATAACCGAAAACACAAGACAGTTTCGTGTGAGCATTGTAGTAATAGATATCAAACAAGTGGCGCATTGACTAAACATGTTAAAAAAACACATGCAAATTTACTACCTCGCTGTGATGTATGTAATACAGCGGTGGTAAACGATAAAGGACTTTATATGCACAAGCTATGGGCACATACTTCATTGCCGTTTCCTTGTAGCAATTGTCCATCGCAGTTTTTTAATGAGAAAGCGCTCAAGACTCATAATAGTTTGAACATGTGTGATTTGTCGTGTTGCAAACACTGTGGCTATGGATTTGGAGATTTTTATTTGATGAAAATGCATATCGGTCTTTGTCATAATCAAGATACGATGTATGGAAAACTGACATTTGATTGCGATGTTTGTGAAGTTAATTTTCATAGTAAAAATGCTTTGGAGAAACATTACGCAACTTGTGCGAAAATGATACATTGTGTGCAGTGTGGGGATTGTTTTGAGAATGCTAAGTTGTTGATTAAACATTCAAAAATACACCAAATAAAGAATATAAACTACAAATGTGGTAATTGTCAAGAATACTTCAGGAATATAGAATTATTACAGCGTCATTACTATGCGGCAAAAAATGAGACACCGTGCCAACCTGCAGAAGAATCCATGAAGCCGCAATCGAGAACGGCGACAACAACCAAAGTGTGGGGCATTGTCGATGGTAAAGTGGTGGCAAAGAGGCCGGACGAAAACAAAAGAACCCTAAATAATGTCTGCGAGATCTGCGGCCGAGGATTCTATAGTCTCCCAAGCTTTATTCAACATCGGCTCAGACACGGCGAGAAATTATACGCATGTGACAAGTGCCCGAAGAAATACCATGTGAAGTCGCATCTGGAGAATCACATCAACACGCACACTGGAGAGCGTCCGGTCCAGTGTGATCAATGTCCACAAACGTTTAAAGGGAAAATGAGTTTATACCAACATCGTGAAAAACATCGCAAGGCCAACCACGCTTGTCAAATATGCGGTCTTGAATTTACCACAGCGTCTCGAGTTAAAACTCACATAACTTCAGTACACATCAGGAATAGGCCAGTTACTAGCGGAATTCCTAAGAAGAAACGGAAAACTAAGATGGAAGATGTTTCTGAGGATGTCATTATTGAAGAAGTAATTTATGAAGAATATTTAGATGATTATGAGGAAACTGAGTTTGAGGAGTAA
- Protein Sequence
- MSVKLTDAKSWAKVRACRACLATDVNLFDIRKNSLAENYMLMAGISVQDCFPQFLCLFCVDSVKKFVNFRKKCRKAYTVLVGIHNKGRPVYTAHIRDVHYSHKDLQIPYSISQVKIEELGNTKVQESHNINDLKDEQSANSDVFDTYFDNTESGDQNDSDDEFEHESSNEQLANLNETEIDRENNETDNTKNVKVFTIGDIIDAEGEDLEYIENKWLKGELDIESLANKPLNQVIPKRPDTEELTDMIEFLDIPELENLPLPENRVFVTFRKEITNVDYAVLAHKYDFRVKFLTKQEQIDELEESKRSHRKTTCKICGLDYSYRKGLVCHMKAAHDANNEHICELCKARFKERRSLVAHLRKHAVTFYCRICNYKTKFQMDLKRHNRKHKTVSCEHCSNRYQTSGALTKHVKKTHANLLPRCDVCNTAVVNDKGLYMHKLWAHTSLPFPCSNCPSQFFNEKALKTHNSLNMCDLSCCKHCGYGFGDFYLMKMHIGLCHNQDTMYGKLTFDCDVCEVNFHSKNALEKHYATCAKMIHCVQCGDCFENAKLLIKHSKIHQIKNINYKCGNCQEYFRNIELLQRHYYAAKNETPCQPAEESMKPQSRTATTTKVWGIVDGKVVAKRPDENKRTLNNVCEICGRGFYSLPSFIQHRLRHGEKLYACDKCPKKYHVKSHLENHINTHTGERPVQCDQCPQTFKGKMSLYQHREKHRKANHACQICGLEFTTASRVKTHITSVHIRNRPVTSGIPKKKRKTKMEDVSEDVIIEEVIYEEYLDDYEETEFEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -