Epin017685.1
Basic Information
- Insect
- Euzophera pinguis
- Gene Symbol
- -
- Assembly
- GCA_947363495.1
- Location
- OX376154.1:22859674-22873369[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.011 0.89 10.7 0.7 3 23 137 157 135 157 0.97 2 14 0.0021 0.16 13.1 2.8 1 23 315 337 315 337 0.99 3 14 3.2e-05 0.0025 18.8 0.7 1 23 343 366 343 366 0.97 4 14 0.19 15 6.9 7.0 1 23 371 394 371 394 0.94 5 14 0.00038 0.03 15.4 1.0 2 23 572 593 571 593 0.97 6 14 0.00012 0.0097 16.9 3.5 1 23 599 621 599 621 0.98 7 14 0.32 25 6.2 1.6 1 23 719 741 719 741 0.97 8 14 0.022 1.7 9.9 2.9 1 23 747 769 747 769 0.95 9 14 0.0046 0.36 12.0 3.3 1 23 775 797 775 797 0.98 10 14 0.034 2.7 9.2 5.3 1 23 806 828 806 828 0.98 11 14 0.0023 0.18 13.0 0.8 3 23 876 896 875 896 0.97 12 14 0.014 1.1 10.5 4.3 1 23 913 935 913 935 0.95 13 14 2.9e-06 0.00023 22.1 0.7 1 23 941 963 941 963 0.98 14 14 0.00015 0.012 16.7 6.3 1 23 969 992 969 992 0.98
Sequence Information
- Coding Sequence
- ATGAATACTAACATAGATGTTGACCCGCTAAGTACTTATGAGTACTCGTACGACTACAACACACAAATAAATGTAAACCCGTACGCACTCAACCCAGTGAAACAGGAGCAGCCAATGATAAACCATGAATTTCTCAACCACTTCATGGACACTACTTACAGAAATGATAGACAGTACACCAACCAATACCATGATATTCAATACACTGACCTACAGTCAGCAGGTAATATAAATAACGGAAACCATAGTAATGGAACTGTTAGTCACAATGCTCCTAATTGTATACAGGACCATAAAGAAGTAGATATAAAGCCGTTAATAAGTCCAAAGAAAATTAAAAAGGAGAAGGGCAAAAAGAGCACTTATTTTTCTGAGAAAATACTTGATAATGATTTTAAATTTTATGGTTGTTCTGTGTGTAATATAAGCTTTTCAATGTTACATGAATTAGACCAGCATGTGACTACTCATAAAGACAGGGTAACAAGCTATGATTTAAAAATAAAAAATCAGATTAAAAGGAAGAATATGAAAAAAGAACAAAAGAGGAAGAAGAAAACCAAAGATGTAAAATCAGAGGCAACATTTGAACTGGAAATAAAGCCTGAAGATGGTTACATTGGTAACGAAAAGGCTTCCGAATTTAATGGAAGCTCAGATGAAAATAAAACAATGGATAACGAAAATAAAAACTTAAATGAAAGTAACGAGTTGGAGAATAATGCAAATCAAAACAATGAAAATAAAGGGTTTAATGCTTTAGGTGATGGAAATAGTTCAACGGATAATGGAAATAGGTTAATAAATAAAGAAAATGAGTCTAACGTTGATGACGATTCTAAAGTCAACGTGGAAGCAGCTATAGCCATAGTCAAGGACAATATAGCTAACATTGAAGCCAAAATACAGTCTGAAGCAGAGTTGAACAATTTAGCGAAGATTTATAAATGTTTCGCTTGCCAGAAACAGTTTACTTTGAGTTATTATTTGAAACTGCATGTGAGATCACATACAGACGAGAAACCGTACACATGTACAGTTTGCGGGCAGTCATTCATAACGGCAAGCAAACTGGGCAGACACAACAAGCGTATGCACCTTTCTGTCAGGTACCAGTGTCGGATATGCTACAGGTTCTTCTCCAAATTCGAATGCCTGACTCGCCACTTCGACAAGAAACATCCGGACGACAAGCTTGAAGGGGAGCCGTATGATTACAACGCCATCTTGCCGTATTTGAAAGAATTGGAAGAGCAATTGAAAGAAAAAACTGAAGAAACCAAAATGGCGAAGACCGAAGATCTATGGGGCGACTGGCCCCCGGCCATAGACAATGGAGAAACCAGTGAGAAACCAATGGAGGTTATGGTCGATGAGAAACCTTTCGATTCTATTGTCGACGAGAAACCTCTGGAAGTTTTGGTGGTAGGGGACATGCCGCATGTTGTAGAGATAAAAAAAGAGAATCCTTACCCCGAATTCGCAGCTGTGAAGGACAGCGATAGCCTGAAGAGCGAGAAAGGAGACGACGATGATGACGTCATGGACGACAGTTTCAAGGACGAGGACGTCAGAGATAACGCGTTTGCCGATGACGATGGGAACTTGTCAGACGACAACTATTTCCCATCAGGCACATGGGTGCCCCCAACACCTAAAGTAGAAATCGAAGAGCAGGTCCCCAAACGACAGAAAAAGCCAGGCAATCCGTTGAAATGTGATATATGTAACAAGAAGATCAGTACAATAACATATATGAGGATACATATGAGGACGCACACGGGAGAGAAACCTTTTAAATGCTATTTGTGTAATAGAGGGTTCATTACCTCGAGCAAGCTTCATAGACACGTGTTGACACATTCCGAGGCGTGGGAAGGAAAATTGGAAGGAGAAGACATTAAAGAAGATAAAGACGGAATAAAAGAGGAGAAAGAAGTAGAGGAGGAGGGAGATAATGTCAAGAAGAAGAAGATTGGCAAAGATAAGAAGAGTAGAATAAAGCGAGCGAAGGCGGAATTTGCAGCCAAATCGAAAGGCGACTGTAAACGCTCCAAGAGATGGCAGCACACATGCGAGTTTTGTCACAGGAAGTTTTTACACGCTGAGACGCTGCAGGTGCACAAGAAGTGTCACGAAGGCGAAGACCTAGTGTACCGTTGTCACTTTTGCCTCCAGCCGTTCGAAACTGCAAACGCAAGAACTGAACACGAAACCACACATACGGGACCCAAGCCTTACCTTTGTACGGATTGCGGCAGGCATTATAGAAAACGAGAGGCCATGATTTACCACAAGAAGCAACACAAGCCGGACCAGCTGTTCAGTTGCGAGATCTGTATGAAATCCTTCAACGCTCAATGCAAGCTGCAACGGCATTTGCAAAGTCACAGAGAAAAGAAATACATACTGCGGTACGAGTGTCCCGTGTGTGCGCACATGTTCCATACAAAGTATCACATACAGATGCACTTGACGACGCACCAGAAGGAGGGATTGATAAAAGAGAAAAACCGCAACGAAATTCTAGCAATGGTTTTGCAAAACGCTCGAAAATTCCCGAAGAACGCCGACGTCGAGCCGAGCGTTCCCGAACCGTTGCCGAATGACGACCGATCGCGAATCTGCAACATTTGCGGCGAAATATTCCAACATTTCTACTTCCTAGAAGAACATCTGAAGAGTCACGGCTCCAAAATCGCTTTGGAAGACCTCAATAGCGAAGAGGAAAAGAAACACATATGTCCCGTGTGCAATAAAGGCTTCAAATTGCATTACTATTTGAAATTACATAGTTTTACGCATACGAAAGAAAAACCGTTCATTTGTCAACAGTGCGGTAAAGGTTTTATTACGAGAGGTAAGTTGAAGCGCCATCTTGAGACGCATACGGGTATTAAGAAGTATCAGTGTCATATCTGTTGTAAATTCTTTACAAGATCCAGTTATCTTAGGATTCATGTTAGGACTATACATGGTACGCAAGATTATAATTCTAGGTTAGGTAAGAAATATATCAGTAGGGATGATCGGGATGTTTATTGA
- Protein Sequence
- MNTNIDVDPLSTYEYSYDYNTQINVNPYALNPVKQEQPMINHEFLNHFMDTTYRNDRQYTNQYHDIQYTDLQSAGNINNGNHSNGTVSHNAPNCIQDHKEVDIKPLISPKKIKKEKGKKSTYFSEKILDNDFKFYGCSVCNISFSMLHELDQHVTTHKDRVTSYDLKIKNQIKRKNMKKEQKRKKKTKDVKSEATFELEIKPEDGYIGNEKASEFNGSSDENKTMDNENKNLNESNELENNANQNNENKGFNALGDGNSSTDNGNRLINKENESNVDDDSKVNVEAAIAIVKDNIANIEAKIQSEAELNNLAKIYKCFACQKQFTLSYYLKLHVRSHTDEKPYTCTVCGQSFITASKLGRHNKRMHLSVRYQCRICYRFFSKFECLTRHFDKKHPDDKLEGEPYDYNAILPYLKELEEQLKEKTEETKMAKTEDLWGDWPPAIDNGETSEKPMEVMVDEKPFDSIVDEKPLEVLVVGDMPHVVEIKKENPYPEFAAVKDSDSLKSEKGDDDDDVMDDSFKDEDVRDNAFADDDGNLSDDNYFPSGTWVPPTPKVEIEEQVPKRQKKPGNPLKCDICNKKISTITYMRIHMRTHTGEKPFKCYLCNRGFITSSKLHRHVLTHSEAWEGKLEGEDIKEDKDGIKEEKEVEEEGDNVKKKKIGKDKKSRIKRAKAEFAAKSKGDCKRSKRWQHTCEFCHRKFLHAETLQVHKKCHEGEDLVYRCHFCLQPFETANARTEHETTHTGPKPYLCTDCGRHYRKREAMIYHKKQHKPDQLFSCEICMKSFNAQCKLQRHLQSHREKKYILRYECPVCAHMFHTKYHIQMHLTTHQKEGLIKEKNRNEILAMVLQNARKFPKNADVEPSVPEPLPNDDRSRICNICGEIFQHFYFLEEHLKSHGSKIALEDLNSEEEKKHICPVCNKGFKLHYYLKLHSFTHTKEKPFICQQCGKGFITRGKLKRHLETHTGIKKYQCHICCKFFTRSSYLRIHVRTIHGTQDYNSRLGKKYISRDDRDVY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -