Epin017962.3
Basic Information
- Insect
- Euzophera pinguis
- Gene Symbol
- -
- Assembly
- GCA_947363495.1
- Location
- OX376154.1:25899054-25912804[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3 2.4e+02 3.1 0.2 2 23 312 334 311 334 0.94 2 15 1.1e-05 0.00085 20.2 1.5 1 23 356 378 356 378 0.98 3 15 0.0012 0.092 13.8 0.5 1 23 382 405 382 405 0.98 4 15 0.00093 0.073 14.2 0.3 2 22 411 431 410 431 0.95 5 15 0.1 8.1 7.7 3.7 1 23 438 461 438 461 0.97 6 15 0.21 17 6.7 0.3 1 12 468 479 468 482 0.89 7 15 0.018 1.4 10.1 0.0 2 23 512 534 511 534 0.91 8 15 7.6 5.9e+02 1.9 3.0 2 23 559 581 558 581 0.93 9 15 0.0002 0.015 16.3 1.8 1 23 629 652 629 652 0.96 10 15 2.3 1.8e+02 3.5 0.7 3 21 659 677 658 678 0.92 11 15 0.00069 0.054 14.6 0.7 3 23 687 708 685 708 0.94 12 15 0.001 0.08 14.0 0.2 1 23 715 738 715 738 0.96 13 15 0.0014 0.11 13.6 0.2 1 23 743 765 743 765 0.96 14 15 4.4e-05 0.0034 18.3 0.3 1 20 771 790 771 793 0.94 15 15 8.6e-05 0.0068 17.4 1.5 1 23 799 822 799 822 0.96
Sequence Information
- Coding Sequence
- ATGGCAGCGAAATCTTCGGAATGGCGACCGGGCCCTACAGTGTGTCGGTGTTGTCTCACAGAAGGCTGTTACAAAGACATTTCTACCGAATATTTTTGGATGGGAAAGCGTGAAGTGTACGCAGAAATGTTAAAGGAAACCTTAGAAATTACTATTGCATATTCAAAAGCAGGCGGTCCTAATAGCAACAGTCGTCTAATCTGCGAGCCGTGTATATCCAGACTCCGTGATGCAACGGAGTTCAAACGTCAGGTTGTGGAATGTGAGAGGATGTTCATGCAGCATTTGGACCCTGGCAGCTCAAGTCAAATTGTCGAAGAAGACTCGGAGCAATTGGAGAAGATTAAAGTGGAAGCCGTGAAACTTGAAAAGGGGAACAGCGATGATGATTTCGATGATCACCACGACTTTGGCCTCGACGACGACGACGATGATGATGATGACCTTGACAACCAACCGCTAACCAAACTGGCCACCAGAATACCCAAAAAGGAATCCGTAGATGTATTAGACTTGTTAGACAACACAAAGGCAGCGGGGAAAAGGAAATCGACGACCAAGGCTAAACCTCCACCGGTTAAGAAGGCCAAAACTAAAGTTGAACAGGTCAAAGTTAAACCGTCGAGCAGTAAAGCTACGTCGAGCAGTAAAGCTACGTCGAGCAGTAAAGCTAAACCGGAGAAGAAGAAGAAAGACGAACGGTACACTTATGACCCTTCGCGCGCAAACGCCGAAGTCATCTTACGTAACACAACGGCATACCCTTTTAGGGTGAACGATAAGTCCATACTGTGCGTATATTGCCAAGACTTGTTTGACGATCCCGATATATTTCGAACCCACATGGACCAGGAACACGAAATATTCAGTTTAAAAGTCGCCTTCTATAACCTACCTAAGTCGGAGTTCGTTAAAGCTGATCTCACGAATTTGAAGTGTCGATCGTGCACAGAGCAGTTCGAATCGCTAGAGGCAGCGGCCGAGCATTTGACAACCACCCACAATGAGAATTTGAATAAGGAAGGAAAGTTAGGCGTGATGCCGTATTATTTGCAGAAGGATGTGTACAGCTGTGCCATATGCGAAAAGAGCTTCCCGTCTTTATTCCACTTGAACAGGCACACTATAACGCATTTCCTAAGTTACGTGTGTCACGTATGCGGGAGCAGTTACGTTGCCAGCACTGGATTACTTCGGCACGTGCGCTCGAAACATCAAGATTACGAAGTTCCGTGTAAAAAGTGCGGGAAGACATTCCCCACAATGGAAGCCAAGGAGAAGCACAGACGCACGGAGAAACAGTGCATGCCGTATTGTTGTTTCAAATGCAACGAGAGATTCTTAGACTGGAAAATGAGAAAGCGACACATGGAAACTGCTCACGGGCAGAGCAAAAAGTTGTATCGATGTCGCGACTGTGATTTGACGTTTAATAACGAGGAAAAAGATGCTAATGTCGTCGCGAGACGCAACGCCGAGATAATAGTGCGATTGTCAACAGCGTACCCGTTCAGACTCCCGGACGACACTATGGTCTGTGTGTACTGCGCGGAAAGTTACAATGATCCCGCTATGTATAGAAAACATATGGACGATGATCACGCCACGTTCAATAGCCGTATGGCTTTCATACATTGCGGCGAAGGATCTATCAAAGCTGACTGCACAGATCTTCACTGCAGACTTTGCTATAAACAGTGTCAGAATTTAGACGAAATAGCTCAACATTTACGGTATGAACACGACGAACCTATAGATGTTAATGTCGATTTGGGAATACAACCATTCAAATTAGAGAAAGACAAATTTAGTTGCGCTATGTGTAATTCGAAATCTCTTTGCCTGCGGCAACTGAGCAGGCACACGCAAACTCATTTCTTAAAGTACACCTGTGAAGCGTGTGGAAAGTCTTACGGCACATTAACGACCTTAAGGCATCACATTAGATTCTCGCACATAGGAAACGAAAGGATATGTAGAAAATGTAAAATGACATTCGGCTCGCTTCAAGCGAAGAGGAATCATCTAAAGCAGTCCCCAAAATGTTGGCCACATTTGTGCAATGTTTGCGGTCAACGTTTCGTGACGTGGAACCTGAAACAGGCTCATATGAACCAGGTGCACGGCGCTCAGAAGAAATCATACGTTTGTCCGGAATGCGCGGAAGTATTTGCTGATCGAAAAAAGTATAGAGTACATTTCAAAGTTACGCACACTGATGATAATTATATGTGCGCGAGTTGCGGCATCAAATTTGAAACTAAACGCAGTCTAGAGGAACACAGGGTAGTTCATACGAAGGAGAAGCTCTTCCCTTGCCTTGTTTGTTCAAAATCGTTTCCTAGGAAAAAGAATTTAGCCCAACATATGTGGATACACAGCGTAAACAAGAGATTCGAGTGCACGTTATGTAATAAACAATTTAATCAAAGAGTCAGTTGGAAAAACCACATGAAGGCGTATCATCCGGAGGTGTACATCCCTCCTTATCAGTCTACGAGCGCGTTCGAGGAAACGAAAAACAATAATGTCAAACTACTGTTATCTGTTTTAAAAACTGACTAG
- Protein Sequence
- MAAKSSEWRPGPTVCRCCLTEGCYKDISTEYFWMGKREVYAEMLKETLEITIAYSKAGGPNSNSRLICEPCISRLRDATEFKRQVVECERMFMQHLDPGSSSQIVEEDSEQLEKIKVEAVKLEKGNSDDDFDDHHDFGLDDDDDDDDDLDNQPLTKLATRIPKKESVDVLDLLDNTKAAGKRKSTTKAKPPPVKKAKTKVEQVKVKPSSSKATSSSKATSSSKAKPEKKKKDERYTYDPSRANAEVILRNTTAYPFRVNDKSILCVYCQDLFDDPDIFRTHMDQEHEIFSLKVAFYNLPKSEFVKADLTNLKCRSCTEQFESLEAAAEHLTTTHNENLNKEGKLGVMPYYLQKDVYSCAICEKSFPSLFHLNRHTITHFLSYVCHVCGSSYVASTGLLRHVRSKHQDYEVPCKKCGKTFPTMEAKEKHRRTEKQCMPYCCFKCNERFLDWKMRKRHMETAHGQSKKLYRCRDCDLTFNNEEKDANVVARRNAEIIVRLSTAYPFRLPDDTMVCVYCAESYNDPAMYRKHMDDDHATFNSRMAFIHCGEGSIKADCTDLHCRLCYKQCQNLDEIAQHLRYEHDEPIDVNVDLGIQPFKLEKDKFSCAMCNSKSLCLRQLSRHTQTHFLKYTCEACGKSYGTLTTLRHHIRFSHIGNERICRKCKMTFGSLQAKRNHLKQSPKCWPHLCNVCGQRFVTWNLKQAHMNQVHGAQKKSYVCPECAEVFADRKKYRVHFKVTHTDDNYMCASCGIKFETKRSLEEHRVVHTKEKLFPCLVCSKSFPRKKNLAQHMWIHSVNKRFECTLCNKQFNQRVSWKNHMKAYHPEVYIPPYQSTSAFEETKNNNVKLLLSVLKTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -