Epin003181.1
Basic Information
- Insect
- Euzophera pinguis
- Gene Symbol
- -
- Assembly
- GCA_947363495.1
- Location
- OX376182.1:3948601-3962219[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.018 1.4 10.2 0.2 1 23 200 223 200 223 0.96 2 11 0.002 0.16 13.1 4.7 1 23 230 252 230 252 0.98 3 11 0.00038 0.03 15.4 1.4 1 23 256 279 256 279 0.93 4 11 0.0009 0.071 14.2 4.7 1 23 307 329 307 329 0.98 5 11 0.022 1.8 9.8 0.8 3 22 341 360 340 364 0.89 6 11 0.00015 0.012 16.7 3.4 1 23 397 419 397 419 0.98 7 11 0.03 2.3 9.4 0.3 2 21 428 447 427 452 0.90 8 11 2.2e-06 0.00018 22.4 0.4 1 23 460 483 460 483 0.94 9 11 0.0006 0.047 14.8 4.2 1 23 489 512 489 512 0.96 10 11 8.2e-06 0.00064 20.6 1.6 3 23 521 542 519 542 0.91 11 11 0.0065 0.51 11.5 3.0 1 23 548 571 548 571 0.98
Sequence Information
- Coding Sequence
- ATGTCAGCTCCGTCGGTATGTTGCGGCTGTTTGAATAGCGACCGAAAATTATTTGGAATTGAAGAGTTTTGGAAAGAGCAATATTTGGCTCAAATAATCAATGAAGTTATGACGCCTTGCCAGCTGAGCGAGCCTCTTCAATTGTGTTATGAGTGTGACGCACTTCTTTCAAAATGTGTGAGATTTAAGCACAGAGTAAAAAACTCTTATAGTCTTCTATGTGATTATTTACAAAAGAACATCAACAAATTAGATCCCAAATCACCCTTACTAACAATGAACCACAACATATACACCATCACCCTTCTCCCCGACTCCGAAACAGAAGGGGAAATCATGCAAATAATAAAACAAGAGAACTTAACTCCTAAAATCGAACAAGACATAACAAATATCAAGGAAGAAGACAACACATCTCTTTACTCAGACCGTAACGATGATGACATGCCGTTGACAGAACTGAAAAAAAAGAAAAAAGTGAAAATCAAAAAGAAAAGTCAAGGAACAGAGATGTTTAGAGAAGTGGAGTTGAGCTTAGAGGAGTTGGAGGAAGAGAGAAGACTGCTAGTTCTAAAAGAGGAGTTTGTCAATGCCATGTTTAAGTGTGACTTGTGTATTGTCACATTTCCAAACACGGACGATTTGAGCGACCATATCAAGTTGAAGCATGAATTGCACGCTTCCTATCACAAATGCAACACATGCGAGCGCACATTCAGTTCTGAAGTATCGTACAACTACCACACAAACAAACACACCAGGCGCTACCAGTGTACAGTGTGCAGTAAGAAGTTCACCAGTAAACGGGAGGCGCTGAGACATTACGACCAGGCTCATTGTTGTGGACCAGAAATCCCATACAGCATATCAAAAATGGACAAAAATGGAGTAGCAGACGATAGCCTAAGCCAAGAGTCGTTCCCGTGTGAATTTTGTCACAAAACATTCAAATGGAAGACGTCCCTTCGTAAACACACGGAGACGCATAAAATTGAAATGGGACAGAAAAGGAAACCATATTGTGAGCCGTGCAGATTATCTTTCTCAACCACTGCCAATCTACAAAAACATGCCAAGACCAGTTCGAGACATCAGATTCAGTTGAAACTTAGGAAACTCCAACAAGACCAGCCATCTGGCACAATATCGAAAGAGGTATCGCTGACAGTACATCGATCGCTGCAGCAATACCAATGTCCACACTGCGACAAGCGATTTCAATGGCGCGGCAATCTGCACAGACATCTAGCCAGCCACGCTGCCAGGGTAAACGGTAGTCTGGTCTGTGAACCCTGTAATCGAACATTTTCGTCGATAGCGACGTACAAGCAGCACATGGAAGTCAGCAAGAAACACGTCAGTGAGAACGATTACAAGTACATGTGTAGTGACTGCGGCAAACGGTTCGCGAACAAGACTAAGCTAAAGGACCACATCGACTGGGAACATCTCAAGAATTACACTCACACGTGTAGCGTGTGTCAGAAGGTGTTCAAGAGTCACACGTCGCTGTACCTTCACAGGCAAGTTGTTCACAAGAATGATGGTGTTGATCATTTGTGTGATCATTGCGGAAAAGCTTTTCCGAACCAATCGAAACTCCGTAGTCACATAACGGCCGTGCACAGTGGCGCCACTCCGTATCGTTGTAGTGTCTGTCCCGCGCGGTTCAGTTGGCATTCCTGTCTCTCACGACATGTTAGAAGAGCACATCCCAGGAGGAAGCGGGACGAAAGCTGA
- Protein Sequence
- MSAPSVCCGCLNSDRKLFGIEEFWKEQYLAQIINEVMTPCQLSEPLQLCYECDALLSKCVRFKHRVKNSYSLLCDYLQKNINKLDPKSPLLTMNHNIYTITLLPDSETEGEIMQIIKQENLTPKIEQDITNIKEEDNTSLYSDRNDDDMPLTELKKKKKVKIKKKSQGTEMFREVELSLEELEEERRLLVLKEEFVNAMFKCDLCIVTFPNTDDLSDHIKLKHELHASYHKCNTCERTFSSEVSYNYHTNKHTRRYQCTVCSKKFTSKREALRHYDQAHCCGPEIPYSISKMDKNGVADDSLSQESFPCEFCHKTFKWKTSLRKHTETHKIEMGQKRKPYCEPCRLSFSTTANLQKHAKTSSRHQIQLKLRKLQQDQPSGTISKEVSLTVHRSLQQYQCPHCDKRFQWRGNLHRHLASHAARVNGSLVCEPCNRTFSSIATYKQHMEVSKKHVSENDYKYMCSDCGKRFANKTKLKDHIDWEHLKNYTHTCSVCQKVFKSHTSLYLHRQVVHKNDGVDHLCDHCGKAFPNQSKLRSHITAVHSGATPYRCSVCPARFSWHSCLSRHVRRAHPRRKRDES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00146719;
- 90% Identity
- -
- 80% Identity
- -