Epin002979.1
Basic Information
- Insect
- Euzophera pinguis
- Gene Symbol
- -
- Assembly
- GCA_947363495.1
- Location
- OX376182.1:1772356-1786726[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00018 0.014 16.4 1.4 2 23 283 305 282 305 0.96 2 14 0.19 15 6.9 5.9 2 23 313 334 312 334 0.97 3 14 0.0022 0.17 13.0 3.0 1 23 338 360 338 360 0.97 4 14 0.0017 0.13 13.4 1.2 1 23 365 388 365 388 0.96 5 14 0.11 8.4 7.7 0.1 3 23 395 416 395 416 0.95 6 14 1.8 1.4e+02 3.8 0.2 1 19 424 442 424 444 0.90 7 14 0.23 18 6.6 0.2 3 23 453 474 452 474 0.90 8 14 0.021 1.6 9.9 0.3 3 20 484 501 482 503 0.93 9 14 0.062 4.8 8.4 0.2 2 23 509 531 509 531 0.92 10 14 0.0008 0.063 14.4 5.1 1 19 537 555 537 563 0.92 11 14 1.4e-06 0.00011 23.0 0.4 3 23 613 633 612 633 0.97 12 14 9.2e-06 0.00072 20.5 2.6 1 23 639 661 639 661 0.98 13 14 2.6e-05 0.0021 19.0 0.4 1 23 667 689 667 689 0.97 14 14 0.00052 0.04 15.0 3.7 1 23 695 718 695 718 0.97
Sequence Information
- Coding Sequence
- ATGTGGTCGGGTAATTTATTAATTAGTGATAATCCAGTAGCTTGTAGAGGTTGTCTCGCTACAGATGTAAAATTGTGTGATATTCATGAAAACAACTTGGCCGAAGCTTATGTTCAGCTTAGTGGGATTTCGCTGCAAGACAACTTTCCTCAACACGTGTGCGTGTTCTGCCGAGCGCTGCTCGTGAAGTTCCTCTCGTTCCGGCAGCGCTGCCAGCGGTCGCAGGCGTTGCTGGTCGACGCCCAGTTCCAGGGGAGATGTTTAACACCGGAATCTTTAAGAGAAATAGGCCTTTGGCATTACAAACCAGCTTACACACAAATAACAGTAATCGACGCAAATTTGTACATAGAATCGCACGAGGAAAAATTAGACATCGAATTAAAACAGGAAGATGTTGAATTACCGAATGATATATTGTATCTTAAAGAAGATAAAAGCTTAAATGAAAGCAAGGATGATGTTATCCATGATGATGATGATGATGTAAACGATGATTTAGTTGAACCTCTAGAGGTATTCGCCGATGATTGTATTGATGTTCCAAAAGTTAATCCGAAAAGGAAAGCTAAGAAAGTTTTAGAAGATTCAGAAGATGAAGAATTTGAATTACCTAAAAGGGCTAAAAAGAAATTCAAGAGACGCGTAAAAGATGATGATGAAATACCAAAAAAGAAAAAGTTGAGAGTGAAAAAGGAAAGGAAAGCGAAAACTTCGAGATCAGCTGAAGATATAAAGAAAATATCGAACTCTTTAGATTTTGAAGTGATATTTTTGACGAGAGAAGAACAACTGGAAGAGATAGAGGAAAGGAAGCAGGCCGCGTTGAAATTGAAGAATAGTATTAAATGCAAGTTTTGCGGGAAGAATTTTCAGAATCAAGACACTCTTGATTCCCATTACAAGATTTATCACGACCCGAGTGTTGGGAATCTCGTGTGCGAATTTTGCCAGTGTCGATTCAAAGCTAGGTATAAATTCTCTCACCATTTAAGGATACATTTGGTTAGGTTTAAATGTAGGAATTGTGAGTTTACTACGAAAAGGGAGTCTACATTGAAACGGCATTACGAATGGCATCAAGGAAAGAGGCACGTGTGTCAGTACTGTAATAAGGATTTCGCGAAGATATCAAGTTATTTGTCACATGTCAGATTGGTACATGCTGGTGAGTTGCCGTGGTGCGAGTTGTGCGGGGAATCTTTTATTGGTGAAAAAGGGGTACAAGCCCACAAGAAATTAAGCCACAAAGGTATAGACGCGTCACAATTCGTCTGCGTCACATGCAAAACGAGTTTCTTGAACGAAAACGCGTTAGACCGTCACAAGGACCATAAGAGATGTGACCTTGCGAACTGCGTGCAATGTGGCGATGCGTTTGCCAGTCAGCAGTTGTTGAAATATCATTTGGTTCAGCGACACACGACTGAAGGAAGCCATTTGACTAACTGCGAGAACTGTGGTGTGAGATTCCACAATATATCAGCGTATCAACGCCATCTATCGGGGTGCGGCGCGAGCGCGGTTTGCGTTCAATGCGGGGAACATTTTGAGGAAGAGAGACAGCTTAATGAACATGAGGCTAAAGAACATACAAGTATGGACTTATTTAAATGTGAGGAGTGCAACAAGACGTTCACGAACGCGTATTATTTTCGCGAACATTGCAATGCTCACTTCAAGAACAAAGAAGTGGATTCGAGAAAGAATTCTCGCCGCGGCGCTCGACCAATGGACCCTTCGCTTCGCAAGTGGCGCGTCGTTGGAGAAGAAGCCGCCGACGTGGTGATGGAGAGCGAAGCACCGAAGAAAACTCTGGCGAAGAAGGGCGCGATGTGTGAAATATGCGGTAAGAGTTTCCAGAATGCTGGTCTATTGAAGTACCATCAACGAACTCATTCAGGAGAAAGGCCGTTCCATTGTACGCAGTGTGCCAAGTCGTTCACAACTAATAGGTTATTGGAGGATCACATGCGTGTACACACTGGCGAGAGGCCGTACAAGTGTGGCAACTGTACGAAAGCGTTCAAGACTCTTGCCGCGCTGAATCGTCACAATTTGGTACACAACGGCCTACGTCGTCACGTCTGTCAGCTTTGTGACAAGACATTCCAAACGTCATCGTGCGCTAAAGTGCACATTAAGACTGTACACATGAAGTTGCCCACCCCGCCGAGGATACGTAGAAGGAGAGTGAAGGATGAATAG
- Protein Sequence
- MWSGNLLISDNPVACRGCLATDVKLCDIHENNLAEAYVQLSGISLQDNFPQHVCVFCRALLVKFLSFRQRCQRSQALLVDAQFQGRCLTPESLREIGLWHYKPAYTQITVIDANLYIESHEEKLDIELKQEDVELPNDILYLKEDKSLNESKDDVIHDDDDDVNDDLVEPLEVFADDCIDVPKVNPKRKAKKVLEDSEDEEFELPKRAKKKFKRRVKDDDEIPKKKKLRVKKERKAKTSRSAEDIKKISNSLDFEVIFLTREEQLEEIEERKQAALKLKNSIKCKFCGKNFQNQDTLDSHYKIYHDPSVGNLVCEFCQCRFKARYKFSHHLRIHLVRFKCRNCEFTTKRESTLKRHYEWHQGKRHVCQYCNKDFAKISSYLSHVRLVHAGELPWCELCGESFIGEKGVQAHKKLSHKGIDASQFVCVTCKTSFLNENALDRHKDHKRCDLANCVQCGDAFASQQLLKYHLVQRHTTEGSHLTNCENCGVRFHNISAYQRHLSGCGASAVCVQCGEHFEEERQLNEHEAKEHTSMDLFKCEECNKTFTNAYYFREHCNAHFKNKEVDSRKNSRRGARPMDPSLRKWRVVGEEAADVVMESEAPKKTLAKKGAMCEICGKSFQNAGLLKYHQRTHSGERPFHCTQCAKSFTTNRLLEDHMRVHTGERPYKCGNCTKAFKTLAALNRHNLVHNGLRRHVCQLCDKTFQTSSCAKVHIKTVHMKLPTPPRIRRRRVKDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00146717;
- 90% Identity
- -
- 80% Identity
- -