Epin002263.1
Basic Information
- Insect
- Euzophera pinguis
- Gene Symbol
- -
- Assembly
- GCA_947363495.1
- Location
- OX376155.1:10262789-10273473[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.12 9.7 7.5 0.1 2 23 197 219 196 219 0.91 2 13 0.039 3.1 9.1 0.1 2 23 282 304 281 304 0.92 3 13 0.066 5.2 8.3 0.2 2 23 311 332 310 332 0.95 4 13 2.7e-06 0.00021 22.2 1.7 1 23 364 387 364 387 0.97 5 13 1.6 1.2e+02 4.0 0.2 5 23 396 414 395 414 0.94 6 13 0.03 2.4 9.4 1.3 1 23 420 442 420 442 0.96 7 13 4.5e-06 0.00036 21.4 1.5 1 23 450 472 450 472 0.98 8 13 9e-05 0.007 17.4 0.4 1 23 481 504 481 504 0.97 9 13 0.00028 0.022 15.8 0.2 1 23 510 532 510 532 0.97 10 13 1.5e-05 0.0012 19.8 5.4 1 23 538 560 538 560 0.98 11 13 0.00044 0.035 15.2 0.5 1 23 565 587 565 587 0.98 12 13 9.1e-06 0.00071 20.5 3.5 1 23 593 615 593 615 0.97 13 13 0.0002 0.016 16.3 2.3 2 23 622 644 621 644 0.96
Sequence Information
- Coding Sequence
- ATGACAAGTTTAAAAGACTTGTGTAGGCTTTGTGGTAAAAGAGACGAGTTATTAAAAGAACTGATAGATAGCAGCAATAAAAATGTTTTAAAATTAATACAGGATCTAATGCAAATCACAATTACTGAGAATGATAGTTTATCAACAAAAGTTTGTTTAAACTGTGAAGAGAAAATAGTGTCATTTCAATTATTTATTTTGGAATGCTATAAGGTGCAAGATAATTTCAAGAAAATATGTGAGCAGAGATTTTCTCTGAAAATCGAAGAAGAAGTTATTGATCTTGGCAACTCATTAATTAAATCAGAGGTAAAAGTTGAGCTGAACGCTGATGACATTGTTTTATGTGCAATTAACAATGATGCATCTATACCAGAGTATGAAGGTGAAGTCTTTGATGATTTCGATAATCATTTGGATGCGCATAACGCTGCTGATGAGGATGAAGACGATGATGGAGATGATGTTACTCTGGCTGATCTTAAAAAGGAAAAAGTTGAAAAGAAAAACAAAGAACCTGAGGAGATGACAACATTAAAAGATGTCCTGCAGAAACCTCATTTGAAAATAAGAGACTTTGTAAAAATCCAGTGTAATTTGTGTGGTATTAAGGCAAAATCTTGGGCTGTTTTACAAGAACATCATGCAGAAATACACAATGGAAAACCTACTGTTACTTGTATTTGTGGTTTTAAAATCAGATCAAAAAGTATTTTATATAAACATGTATTGGATCATAAAATGCAAAGTGAAAAATTATTAAATAAATCTGAAGATGAAGATGGTATTCAATGTGATCCGAATTATCAATGTGATCTCAAAGCAAAACATTTTGTGAAACTACAGTGTCACATATGTGGCGAAAAAGCGAAAACATGGGCAATATTACAAGATCATTACACAATAATTCATCAAAGTAAATTGGTTGTCACATGCTTACTATGTGGCTTTAGCATAAAATCGAAAAGCGTGCTGTACAAACATGTGTTAGAACATAAACTAGAAAGTGTGACTTTAAAGAAAGAAAAGCAGAAGGATAAACGAACAGACATTAATTACTGCAATCTTAAAGTTAAAGATTTTGTTGATTTTGTATGTCAAAATTGCAACAAGAAATTTTCAAGCTGGTACAGTTTGAAGAGTCATACCCAATCAGCTCACAAAAGGCAACCAACAGTTAGATGCATATGTGGTGTATCTCTGACATCTAAAACAGTTTTGTACAAGCATGTTCAAGATCACAAAAATCCCAATTCTTTCTGCTGTGACCAATGTCCAAGAATAACGAAATCTCTTGAGGCGCTTGATAAACACAAAATGTTGCATGTGCCAAAGGCCGAACGGAAGTTTTATTGTGGTTCATGTGATAAAGTTTTCAATACAAAAGACAGTTTAAAATCTCATGAAAGATCACACATACCTATTGAAGAAAGAAAAATATACCGCTGTGGTATATGCGACATGAAATTCACAACTCGTTCATCAGCGGCGTCTCACAAGCGCGTGGTGCACGACAAGATCAAGAGCTACGTGTGCGACCTGTGCGGGTACGCGTGTGGCACCAACGGCGAACTGCGGCAGCACCGCGCTATACACAGCGACGACAAGCCGTTCGTCTGCAGGAAGTGTTACAAGTCATTCAAGACGCATTCCAATCTGTCGACTCACATGGACACCCACGAAGAGACATCATATACTTGTGCAGTTTGCAGCCGAGTGTTGAACAGCCGGCGCACGCTCCGCAAACATTTGTTGGTGCACGAGGAGCGGTGCAAGCATGTCTGCGACTACTGCAACAAGGCTTTCAAGAGGAGACAGACTCTAAAGGTTCATTTATACACGCACACCGGCGACAAGCCGCTCACATGCAAATGGTGCGACGAGCGATTCGCCTACGCGTCCACTCTGCGCTCGCACCGCATGCGATGCCATCCGGACAAGATGCCCGCGCAAATCCAACACCAACAGGCCACGTATAGACAATACGACCACCTTCCGCCAGAGGAGTACATCAAGAGCGACTTGGCAGCGATTGGTTTAGACAAGGATCAAGCGGAGGCAATGTAA
- Protein Sequence
- MTSLKDLCRLCGKRDELLKELIDSSNKNVLKLIQDLMQITITENDSLSTKVCLNCEEKIVSFQLFILECYKVQDNFKKICEQRFSLKIEEEVIDLGNSLIKSEVKVELNADDIVLCAINNDASIPEYEGEVFDDFDNHLDAHNAADEDEDDDGDDVTLADLKKEKVEKKNKEPEEMTTLKDVLQKPHLKIRDFVKIQCNLCGIKAKSWAVLQEHHAEIHNGKPTVTCICGFKIRSKSILYKHVLDHKMQSEKLLNKSEDEDGIQCDPNYQCDLKAKHFVKLQCHICGEKAKTWAILQDHYTIIHQSKLVVTCLLCGFSIKSKSVLYKHVLEHKLESVTLKKEKQKDKRTDINYCNLKVKDFVDFVCQNCNKKFSSWYSLKSHTQSAHKRQPTVRCICGVSLTSKTVLYKHVQDHKNPNSFCCDQCPRITKSLEALDKHKMLHVPKAERKFYCGSCDKVFNTKDSLKSHERSHIPIEERKIYRCGICDMKFTTRSSAASHKRVVHDKIKSYVCDLCGYACGTNGELRQHRAIHSDDKPFVCRKCYKSFKTHSNLSTHMDTHEETSYTCAVCSRVLNSRRTLRKHLLVHEERCKHVCDYCNKAFKRRQTLKVHLYTHTGDKPLTCKWCDERFAYASTLRSHRMRCHPDKMPAQIQHQQATYRQYDHLPPEEYIKSDLAAIGLDKDQAEAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00146690;
- 90% Identity
- -
- 80% Identity
- -