Epin012248.1
Basic Information
- Insect
- Euzophera pinguis
- Gene Symbol
- -
- Assembly
- GCA_947363495.1
- Location
- OX376173.1:14336708-14339243[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 9.6e-06 0.00075 20.4 0.1 2 23 56 78 55 78 0.95 2 12 7.9e-07 6.2e-05 23.8 3.4 1 23 84 107 84 107 0.95 3 12 1.8e-05 0.0014 19.6 0.2 1 23 113 135 113 135 0.97 4 12 1e-05 0.00081 20.3 0.1 1 23 141 163 141 163 0.98 5 12 0.0022 0.17 13.0 0.1 6 23 173 190 172 190 0.99 6 12 0.93 73 4.7 1.9 1 23 242 263 242 263 0.93 7 12 0.0011 0.087 13.9 2.5 2 23 452 474 452 474 0.96 8 12 0.022 1.7 9.9 0.1 1 23 480 502 480 502 0.88 9 12 9.3e-06 0.00073 20.5 1.1 1 23 508 530 508 530 0.97 10 12 0.00042 0.033 15.3 0.3 1 23 537 559 537 559 0.96 11 12 0.0022 0.17 13.0 0.4 6 23 569 586 566 586 0.96 12 12 0.00021 0.016 16.2 1.7 1 23 591 614 591 614 0.95
Sequence Information
- Coding Sequence
- ATGTCGACGGTAACAATAAAACGCGAAGGAAGCACTCCAACTCCGCAGCCAGAAACCCTAATAATACACGAAGAAATGCAATACATTACTTGTGGGACATGCCATAAGAAGATGAGGAAAGATTCTTGGCGACGCCACGAAAGATGTCACAGAGATGAGAAAAAATACTGCGACATCTGCGGCCTCGGCTTCACTGACAGCGGGAATCTCGCGCGACACACACGCGCGTTACACACACAACACCGCACACACGCGTGCCCGGTCTGCAATCAAACGTTTTCAAGAAACAGCCATTTACAAGATCATATGAACTCAAAACATTCGAACGTTCGAGAATTCGTGTGCGATATTTGCGGAAAAGCGTCGAAATCTAAAAGCGCGTTAAGAATGCATAAAGGAACGCATAATAAAGTATTGAGGTTTAAGTGTATGGATTGCGGGGCGGAGTTTAAGAGGAGGGGGGAACTGCGTGCGCATGTTAGCGTGCACACAGGCGAGCGGGCGCATGTGTGTGCGTGTGGGAAGGCGTTCCGATTGAGGGGGCAGCTGACGTTGCATGCGCGGACGCATAAACGTGACGCTGAGTTATCTCCTCCGCCGAGCTACGTGGACTCGTGCTCCAATGTCAGCCCAGAGACTCTCAAAACTTGCCCCTACTGCAACGCAGACCTGCCAGATTCCACCTATAAAGATCACTTGGTAGACGCTCATTCAGAACTCCTGTTTCATTGCCAAGAATGCGACACCTATGTTGATAGAAAAGATTTTATCCTACACATGTCGCTTCATTGCGTGCAGTACACCAAGGCCAATCAGGAGGCCGAAACTAAGAAAGTTATTCAAAAAACTGAGGTTAAAAGGGCGAAGAAGAGAAAGAAATTAGAATCTAAAGATGAAAATGAGAATACAAAAGCAGCTAAGCGAAAGTATGAAGTTGTTTCTAAGGAAACTAAACAAGAATCGAAAATTGATGAAATTGAAGTTGAAAACGATAGTACAGCAAATAATATAATTGATAATGCTGGTAATAGTGCAGAGGAAAATGATTTCTCTGATCATAGCGATGTAGAATATGGTTTCGGTCCGCTGCCAGAGTCTGTTTTTGATGCCATAGAGGATTCTCAGGATAACAGTACAGACGAACTATCAAGAAGCGACAGTCAACCTTCAGAAAATAACGATACTCAACCCGTTGAAGATAGCTACACAGAACACATTGAAAACGATACTACACCTGTGGAAGACAGCGATACTCAACATATTGACAATAATGATAATCGACCTATTGAAGAAAAGGAAACTCCTGTTCAAGACGAGCAGAATGGCAAAATTGTATGTCACAAAAAGTCAAGAACGTGTCCAATTTGCTCCAAAACATACACAGCATCATCGAGCTATTTCTATCATATGAAACACACGCACAAGCAGAGCAAAGAGCACGAGTGCGATGTTTGCGGAAGAAAGTTTGGGACGCGCGGGATTCTAGCCCAACACGCCGCATTACACACGGGGGAGAAGAGATTCGAATGTAATAAGTGCGGGAAAAAGTTTAACAGTAAAGCAAGTCTGTACATTCATTCGCAAATTCACCTTAGTGTTAAGAAAGGTTTCCAGTGTGGGGATTGCGGGCGCATGTTTCGTTGGCGAACGGCTTTAGAACGTCATTCGGCGCGGCATTCGGGTTCGCGCGCGCACACGTGTTTCTGCGGGCGAGCGTTCAACGTTCGCGCCGACTTGTTGCGGCACGCGCGAACGCACGCTCGTGGCGAACATCGCTGCTCGCGCTGTAACGCTACGTTCGCTCAGCCGAGGTACTTGCGCGTACACATGATCAACAAACACTCTGAATCTAAGGATAAACTTGAAAGTGAGAACGATCAGTCAGAAATTCCAACGTAA
- Protein Sequence
- MSTVTIKREGSTPTPQPETLIIHEEMQYITCGTCHKKMRKDSWRRHERCHRDEKKYCDICGLGFTDSGNLARHTRALHTQHRTHACPVCNQTFSRNSHLQDHMNSKHSNVREFVCDICGKASKSKSALRMHKGTHNKVLRFKCMDCGAEFKRRGELRAHVSVHTGERAHVCACGKAFRLRGQLTLHARTHKRDAELSPPPSYVDSCSNVSPETLKTCPYCNADLPDSTYKDHLVDAHSELLFHCQECDTYVDRKDFILHMSLHCVQYTKANQEAETKKVIQKTEVKRAKKRKKLESKDENENTKAAKRKYEVVSKETKQESKIDEIEVENDSTANNIIDNAGNSAEENDFSDHSDVEYGFGPLPESVFDAIEDSQDNSTDELSRSDSQPSENNDTQPVEDSYTEHIENDTTPVEDSDTQHIDNNDNRPIEEKETPVQDEQNGKIVCHKKSRTCPICSKTYTASSSYFYHMKHTHKQSKEHECDVCGRKFGTRGILAQHAALHTGEKRFECNKCGKKFNSKASLYIHSQIHLSVKKGFQCGDCGRMFRWRTALERHSARHSGSRAHTCFCGRAFNVRADLLRHARTHARGEHRCSRCNATFAQPRYLRVHMINKHSESKDKLESENDQSEIPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -