Epin003564.1
Basic Information
- Insect
- Euzophera pinguis
- Gene Symbol
- -
- Assembly
- GCA_947363495.1
- Location
- OX376180.1:2495946-2512794[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 8.1 6.3e+02 1.8 0.4 5 23 83 101 82 101 0.91 2 11 7.2e-06 0.00056 20.8 0.9 1 23 113 135 113 135 0.98 3 11 0.00011 0.0083 17.1 4.3 1 23 141 163 141 163 0.99 4 11 9e-07 7e-05 23.7 3.2 1 23 170 192 170 192 0.99 5 11 8.6e-06 0.00067 20.6 0.2 1 23 198 220 198 220 0.93 6 11 8.1e-07 6.4e-05 23.8 4.8 1 23 226 248 226 248 0.98 7 11 3.1e-05 0.0024 18.8 1.8 1 23 254 277 254 277 0.96 8 11 2.9e-05 0.0023 18.9 2.3 1 23 283 306 283 306 0.96 9 11 1.8e-05 0.0014 19.5 1.2 2 23 313 334 312 334 0.97 10 11 1.2e-05 0.00096 20.1 1.1 1 23 340 362 340 362 0.97 11 11 0.0009 0.071 14.2 0.2 1 22 368 389 368 392 0.91
Sequence Information
- Coding Sequence
- ATGATATTCGCAGGCGGCGCGTTCATAGAAGTGGAATCCGGTGAAATGTTCAGAGTGAAATCTGTTCAGAGCAAAACTGATGATGACGTTAACGACGATGGTGTACCGTTGGTTAAACCCGAAAATGGAAAGTTCAGATGTTTGCTTTGCGACCAGAACTCAAAAGATGAATCGCCATACATCACCGACGCTGAACAAATGATGCAACATCTTAAAGTAGTTCACGACGCTCGCCTGTACATATGTAATTGTGGGAAGATTATGAGAAAGAGGTCTTTGTACAGCATGCATATTGTGGAACACATGCCAAAAGCGATAAGCGAAAAGGCGAAATACCACGAATGCGGCGTTTGCGGACGAAGATATATAAACAAGACGTTATTAAGAGAACACATACAGACACACACTGGCAATAGACCTTACACATGCAAATTGTGTGATAAAACCTTCGCTAACAAATATACACATCAGGCTCATCTAAAAACTCATGAGGTGCGAGAACGTCCATATAAATGCGACCAATGCGGAAAGAAGTTCTTTACGCAACAGAATCTCACGCAACACGAGAAAACTCATTTGGGAATTAGGGATTTTATTTGCAACGTTTGTAATAAAGCGTTCGCAACACAACACAATTTAGAGGTACACGGTGTAATACACAGTGGTAAAAAGCCTTTTGTCTGTCAACACTGCGATAAATGTTTCGCCAGACGAGCAGAACTCAGGGATCACACTAGAACTCATACAGGCGAACGCCCATTTTCGTGCGACATATGTCAAGCGACATTTGCACAACGATCGAATCTTCATTCGCACAAGCGCGCGACGCATCTAGACGATAAGAGATATCATTGTGAACAGTGCCCTAAGAAGTTTAAAAGGCGAAGGTTGCTAGAATACCACATAAAGGCGGCGCACACTGGCGAAAGACCTTTGCAATGTTCTCTCTGCCCTTCGTCGTTCGTGTACCCCGAGCATTATAAGAAACATATGAGAATACACACCGGGATCAAGCCTTTTGTTTGCGAGGTCTGCGGCAAATCGTTCAATTCTCGCGACAACAGGAATACGCATCGTTTCGTTCACAGCGAAAAGAAACCATACGAATGTCTTACTTGCGGCGCGGGATATAGGAGAAAACAACTTTTATATGTTCACATGAATAATACGGGTCACGTGGCAGAGTCAATCGTGGTAAACCAGCCGAGAGTtatcaatgcatcgaatgcgTTATACAGCATCAAGGAAGATTTGGAAGAACAAGAAAATGCAACTTTATCCTTAGATAGCGGTAATGAAGCGAAGTTATACATCACGGGAGAACAAACGTTGCTTTTGGCAGATGGTAATATATAA
- Protein Sequence
- MIFAGGAFIEVESGEMFRVKSVQSKTDDDVNDDGVPLVKPENGKFRCLLCDQNSKDESPYITDAEQMMQHLKVVHDARLYICNCGKIMRKRSLYSMHIVEHMPKAISEKAKYHECGVCGRRYINKTLLREHIQTHTGNRPYTCKLCDKTFANKYTHQAHLKTHEVRERPYKCDQCGKKFFTQQNLTQHEKTHLGIRDFICNVCNKAFATQHNLEVHGVIHSGKKPFVCQHCDKCFARRAELRDHTRTHTGERPFSCDICQATFAQRSNLHSHKRATHLDDKRYHCEQCPKKFKRRRLLEYHIKAAHTGERPLQCSLCPSSFVYPEHYKKHMRIHTGIKPFVCEVCGKSFNSRDNRNTHRFVHSEKKPYECLTCGAGYRRKQLLYVHMNNTGHVAESIVVNQPRVINASNALYSIKEDLEEQENATLSLDSGNEAKLYITGEQTLLLADGNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -