Epin017968.1
Basic Information
- Insect
- Euzophera pinguis
- Gene Symbol
- -
- Assembly
- GCA_947363495.1
- Location
- OX376154.1:25928104-25931877[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0026 0.21 12.7 0.1 2 23 56 78 55 78 0.94 2 21 0.054 4.3 8.6 0.4 2 23 105 127 104 127 0.93 3 21 0.58 46 5.4 3.3 3 20 151 168 150 171 0.90 4 21 0.19 15 6.9 0.2 1 10 175 184 175 195 0.76 5 21 0.18 14 7.0 1.9 1 21 202 222 202 223 0.95 6 21 0.0085 0.66 11.2 1.6 1 23 230 253 230 253 0.93 7 21 0.00031 0.024 15.7 0.6 1 23 260 283 260 283 0.95 8 21 2e-05 0.0015 19.4 0.3 1 23 288 310 288 310 0.97 9 21 0.00041 0.032 15.3 1.2 1 20 316 335 316 338 0.94 10 21 1.9e-05 0.0015 19.5 2.2 1 23 344 366 344 367 0.96 11 21 0.00045 0.035 15.2 0.4 3 23 424 445 423 445 0.96 12 21 0.00019 0.015 16.4 2.0 1 23 515 537 515 537 0.99 13 21 0.00042 0.033 15.3 1.2 1 21 541 561 541 562 0.96 14 21 0.12 9.7 7.5 0.3 1 23 603 626 603 626 0.96 15 21 1.3 1e+02 4.2 0.4 2 23 652 674 651 674 0.94 16 21 0.004 0.32 12.2 0.8 2 23 698 719 697 719 0.95 17 21 0.00044 0.034 15.2 0.0 1 23 723 746 723 746 0.97 18 21 0.015 1.2 10.4 0.7 1 23 750 773 750 773 0.98 19 21 3.9 3e+02 2.8 0.4 1 23 778 803 778 803 0.78 20 21 0.00031 0.025 15.7 2.8 1 23 812 835 812 835 0.97 21 21 0.00016 0.013 16.6 1.5 1 23 845 868 845 868 0.97
Sequence Information
- Coding Sequence
- ATGACACCGGGGTGTGCAAGGTTGATTGACCGTCGGTTACATCGGACGAAAGTATACGCCTTGATCATAGTAGAACGAGTCAAAAACGAAATGGCTATACGGAACGCCGAGATGATGTTGAATTATATGACGGTACATCCATTCCGGCTACGCGGGCACCAGTTGGTATGCGTGTATTGTGGGGAACAGTATGTGGATCCCGGAGATTACAGAGAACATATGCATCAGAACCATCAGGAATTTACTATATCAACAGCATTTGCTCATTGTGCACATAGGAGAGACTCACTAAAAGTGGATTGCGCTGAAATCAAGTGCAGAACATGCGGCCAAGAATTCGAAAATTTAGATTCGGCAGCCAATCATATTCACGAATCACACGATCCCAATATGAATGTGTCATGCGGTGTAGGGCTGCAACCTTATAGGCTTGTCAAGGATCATTTGCTATGCTATTTTTGTAATATGAAATTTCCGACTCTGACCAAACTCTGTCGTCATACTCCTACTCATTTCTTGGAGCATACTTGTGATATTTGCGGTAAGAGCTATCTGACTACTGAAGCTCTTAGGTTCCACGTGCGATGCTCGCATTCTGGTAAACACCAATGTAGGAAGTGCTGGAAGGAGTTCGATAGCACAGAGAAGAGGAAGGAACATCAGAGAGAGTCGAAACAATGCTGGACTTTCTCCTGTGTTTACTGTCGCGAGAGGTTCAGCTCTTGGGAAATGAAGCGGCGTCATTTGACGGAATTCCATAATGTGCCTAAGACAAAGTATCCTTGCCCAGAATGTGACTTAGTATTTGATAACAGAAAACAATTTTATAACCATTTCAAATTAGTTCACACTGATGAGAGCTTCGTATGTTCTggttgcgggctgaagttttcttcaaaaaatcaacttgaggatcacaaacttgtgcatactggagagaaatcctttatgtgttttgtctgcctcaagtcgttttcgagagagaagagcctaaaacaacacatgtggattcacagtgagaccaaaaggttttcgtgtaatgtttgtgagaagcaatttgctcaaaaagtgagcctgaaaggccacatgaaatcgcaccaCCCTGATGTTTCCATAGAATGGGCCACATTGGATATTCACGGGCGTAGTGGCGATGATACAAAAAAGAAAATAGTCCTTGTTTACCAGACGCCACAGCGGCGCAATGCCGAACTCATTCTGAGATATTCCACCGCCTACCCTTTTAAAACGAGATTTTATCAGATCCTCTGCGCTTATTGCCACGAAGAGTTTGATACTCTCGTTAATTTGCGTGCTCATATGACTTCTGAACATATTAATTCGGATTTAAAAAATGTTTTCTACAGAATTAAGGATAACCTCTTAAATGTAGACATTACAGCTTTGAAATGTAAAATTTGTAGAGTTGATTTGTTAGATATAGACACTCTAATGACTCATTTATCCCAAGAGCACGGAAAGACTGTAAAATTTAACGCTCGTTTTGGAGTACTGCCATTCAAGCAGGATCTAGATGATCGTTACGTTTGTGTTTATTGTCAAAGATATTTTACAGATTTCGTGCTATTCAAAAAACATATAAACACACATTTTATGAATTTTAGCTGCGATAAATGTGGTACTATGTTTGTGTCGGAACACGCTTTGCGCGATCATCACCGCCAAGTAAAATGCTTCCGAACTGCATACAAAGCTAGAAATGGTAGAGATTTAAAACCACGAACTAATGCTCAAATTATTTTACAATATTCTACTGCATGCCCCTTCCGAACTTGGATGAATAATTTTAACTGTGTTTTCTGTAGAGTGCAATCGAATGATCCAATTAGTTTGAGAAACCACATGGCCACTCGACATGCGAATTATGACGTGAACGCGGCATTCTATAAAAAATTAGGTAAAGAATTCCTAATGATAGATATAACAGATCTTCAATGCAAACTTTGTTTCATGCCTATTGAAAACTTTGAAACGTTAACTTATCACTTAAAGAATGATCATCAACAACCAATAAGTTCCGATGCTCAGATAGGTGTTTTACCATTTAGATTGAATGACGGTTCTATATGGAAATGTACAATGTGTCCAAATGAATTTAAAGATTTTGTATCGCTCAAAAAGCACACATCAGAGCACTTTCAAAATTACGTATGCGATACTTGTGGAGAGGGATTTATTACTGAGTCCGCTATGGTAGCACATACAAAAGTTCCACATGAAAATAAATATAGTTGTAGTCGATGTGTCGCTACATTCACTAACCTCGAAGAGAGAAACATTCACTTGAAAACACAGCATACTAATATGCCATACATGTGCACGTATTGCAAGGAAAAACCAAGATTTGGTAATTGGGAACTACGCAAGAAGCATTTAATTGAAGTACATAATTATAAGACTGGCGCGGATAAATATGAATGTACCACGTGTCAGAAAACATTTAAAACTCGATCAGGAAAATATAATCATATGGCAAGAACGCATAGAATCAAAAAAGATTCTGAATTAAACTATCCGTGCGCACACTGCCCAAAGGCATTCACCACAAAACTTTTCTTGGATAAGCACATGGCGAAGAAACACATGGATATGTGA
- Protein Sequence
- MTPGCARLIDRRLHRTKVYALIIVERVKNEMAIRNAEMMLNYMTVHPFRLRGHQLVCVYCGEQYVDPGDYREHMHQNHQEFTISTAFAHCAHRRDSLKVDCAEIKCRTCGQEFENLDSAANHIHESHDPNMNVSCGVGLQPYRLVKDHLLCYFCNMKFPTLTKLCRHTPTHFLEHTCDICGKSYLTTEALRFHVRCSHSGKHQCRKCWKEFDSTEKRKEHQRESKQCWTFSCVYCRERFSSWEMKRRHLTEFHNVPKTKYPCPECDLVFDNRKQFYNHFKLVHTDESFVCSGCGLKFSSKNQLEDHKLVHTGEKSFMCFVCLKSFSREKSLKQHMWIHSETKRFSCNVCEKQFAQKVSLKGHMKSHHPDVSIEWATLDIHGRSGDDTKKKIVLVYQTPQRRNAELILRYSTAYPFKTRFYQILCAYCHEEFDTLVNLRAHMTSEHINSDLKNVFYRIKDNLLNVDITALKCKICRVDLLDIDTLMTHLSQEHGKTVKFNARFGVLPFKQDLDDRYVCVYCQRYFTDFVLFKKHINTHFMNFSCDKCGTMFVSEHALRDHHRQVKCFRTAYKARNGRDLKPRTNAQIILQYSTACPFRTWMNNFNCVFCRVQSNDPISLRNHMATRHANYDVNAAFYKKLGKEFLMIDITDLQCKLCFMPIENFETLTYHLKNDHQQPISSDAQIGVLPFRLNDGSIWKCTMCPNEFKDFVSLKKHTSEHFQNYVCDTCGEGFITESAMVAHTKVPHENKYSCSRCVATFTNLEERNIHLKTQHTNMPYMCTYCKEKPRFGNWELRKKHLIEVHNYKTGADKYECTTCQKTFKTRSGKYNHMARTHRIKKDSELNYPCAHCPKAFTTKLFLDKHMAKKHMDM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -