Epin002983.1
Basic Information
- Insect
- Euzophera pinguis
- Gene Symbol
- -
- Assembly
- GCA_947363495.1
- Location
- OX376182.1:1810726-1813002[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 4.9e-06 0.00038 21.3 4.4 1 23 6 29 6 29 0.95 2 20 0.0075 0.58 11.3 1.1 2 23 35 57 34 57 0.93 3 20 8.9e-06 0.0007 20.5 0.2 2 23 66 88 66 88 0.97 4 20 3e-06 0.00023 22.0 1.0 2 23 97 119 96 119 0.96 5 20 6.9e-05 0.0054 17.7 2.0 1 23 124 146 124 146 0.98 6 20 1.7e-06 0.00014 22.8 1.1 2 23 152 174 151 174 0.95 7 20 4.2e-07 3.3e-05 24.7 3.0 1 23 180 203 180 203 0.98 8 20 0.013 0.99 10.6 0.5 1 23 211 234 211 234 0.95 9 20 2.6e-05 0.0021 19.0 1.8 2 23 245 267 244 267 0.97 10 20 0.00077 0.06 14.4 0.3 2 23 294 316 293 316 0.96 11 20 1.8 1.4e+02 3.9 0.1 2 21 324 343 323 344 0.92 12 20 0.004 0.31 12.2 1.5 2 23 353 375 353 375 0.96 13 20 0.0022 0.17 13.0 3.9 1 23 395 418 395 418 0.97 14 20 0.0062 0.48 11.6 0.7 2 23 425 447 424 447 0.89 15 20 7.6e-05 0.0059 17.6 3.1 2 23 454 476 453 476 0.96 16 20 0.013 0.98 10.6 2.1 1 23 482 505 482 505 0.97 17 20 0.13 10 7.4 6.9 2 23 513 535 512 535 0.95 18 20 2.6e-05 0.002 19.1 0.2 1 23 542 565 542 565 0.98 19 20 0.005 0.39 11.9 1.1 1 20 572 591 572 592 0.95 20 20 0.015 1.2 10.4 1.9 3 23 607 628 606 628 0.90
Sequence Information
- Coding Sequence
- ATGAATAACCCAGACTTCGTTTGCGACTATTGCAGCCGAACTTTTACAAGAAAATACAATCTACGAACACATATAGAAAACTGCCATCTTAATTCATCATGTTACTGTGAAATATGTCATATGACTTTTGGAAGTCCTTCGGGCTTAGGACTTCATCTTTACCGCGGTCATAACAGATTCGGTCAACCGTACCCCGAGTGTGATATTTGTGGACGTATTTTTACAAGAAAACAAAATATTGTCTCGCACATGATGACTGTCCATCTGCAAGGCCTGGGTCCAGAGATAAAGTGTAAATTATGTCAAAAAGTATTCACGACTGATCGTAACTTAAGAAGGCATATAAACGTTTTACATAATTCAGCTTCGTTTAGCTGTGGTGTTTGCCATAAAGTTTTTAGAGAAAGAAAACGTTTGAACGAACACATGAATATACATAATGATAGGAATGTGCAGTGTCATATGTGCGATAAAGTGTATACGAGCAACGCGAATCTAAAGAGACACGTAGAAATGTATCATGGTGAGAAGGAAGAATTTAAATGCAACATTTGTCCGAAAACGTACACTTCTAATCAAAGTCTTAGAAGGCACACAAGAACAAGACATCAAGCAGACAGTAATGAGGAATTCTCATGTGATTTTTGCGATTTCAGTACTGTTGGAAAAGATAATTTAGATACGCACATATCTAATTATCATAATGTGATGTATGAGACGGAAAACTCCAGTGTTTGTCAAACTTGTGGGTGCACTTTTGAGAGAGAATCACTTTTACGACAACACATAAAAACTGAACATTCGTTCGACATATTCTACAAATACTGCAAAGATTCCTTGTTGAAAGACGTAGGGAAAAAACAAAAGCATGTTATATTGAATTGTGAATACTGCACTATCACATACAACAATATATACGAATTGAAACTTCATTTGAGATCTGTTCACGACAAAGAATACAGACTCACAACTTGCAATGTGTGTTTTGGGAAGTTTTACACTGAAGAAACTATCACAGCGCATAGGAACATCTGTATCCCGCCTCTGGACGTGAATTCCTGTTCGCATTGCGATAAATTGTTCACTGATATATCCAGCTTAGAGTTTCACATAAGAATTTTTCATCCACAAGCTCAAATCGCAGATATCACTTCGACGAAAGATGACACTTTTGAAGGAAATTTCAAATGTAATCAATGCGAAAGAGTGTACTACAGCGATCGTTCGCTCAAGCATCACATTAAGTTGCGGCATACGACTGGCGAAGCGGTAGAATGCGATATATGCTCAAAAATGTTTAACAATAAATACTATTTAGCTTTCCACAAGAAAAATGTCCACAGTCACGTTTCTTGGTCCAAGTGCGACTACTGCGACAAACAGTTCAAGTCTAAAAGATATATTCGAAGGCATATCAAATATACTCATTTGGGAATGCAAAGGTATAAGTGTATCGAATGCGAAACTCTTTTTAAAGAGAAGAAGAGTCTTCGTAAACATGTTAGATCAAAGCATCCAGATTCAACTGCTTTTCAACAATGTCATATTTGCCATAAGAGATTCGAATCGGCGAAATCTTGCAAAATACACTTAAAATTGCTTCATTCGTTCAATATGAACACATATCCTTGTGACTTGTGTTCTGTATCGTTCAGTTCAAACGAAGCATTGACAATCCATTTAAAAACAAAGCATTTGTCGGAAGATAAAATCTTCAAATGCAAAGAGTGCGATTCAGTTTTCAAAGGCCAGGAAAAGTTTGAGAAACACAAGGAATTTTGTCAAATGGGGCCGAATTCGAAAAAGGCCCTGCCTCGCTGTATAATATGTATGAAATATTTTAGCACGAAGGAAACTTTGAAACGACACATAAAGAATTTTCACGCGGAATTTGATTCTGAAGACTTGGCTAATTATGGCGCAAATCGACGAGTATTCACAGTGGACTGTGGTGATTGTATTAAAAATTTCCAAGATGATATGTACTTCGAAGTCTACCAACGGCTAAAGCAATCTAAAGACGCGTTTATTTTCAAATGTGAGAATTGTAAATCGTCATACAATTCCATGGATTATTCGATTCAAAGATATAAGTTGATGAATTCGGATATTACTCAAAGTAAAATGATACTTAGTGAGTTGTGTACTACAGAAATGAGTGATGACGAAGAATTAGCAGGTTTCGGCACCTTTCATGAGCTTATGGAAGCCGAAAGCACTACTAATGATAATTTTGAAGAAATGTCTGTAGTTAAAAGTGAACCTACGTCCCCTTAG
- Protein Sequence
- MNNPDFVCDYCSRTFTRKYNLRTHIENCHLNSSCYCEICHMTFGSPSGLGLHLYRGHNRFGQPYPECDICGRIFTRKQNIVSHMMTVHLQGLGPEIKCKLCQKVFTTDRNLRRHINVLHNSASFSCGVCHKVFRERKRLNEHMNIHNDRNVQCHMCDKVYTSNANLKRHVEMYHGEKEEFKCNICPKTYTSNQSLRRHTRTRHQADSNEEFSCDFCDFSTVGKDNLDTHISNYHNVMYETENSSVCQTCGCTFERESLLRQHIKTEHSFDIFYKYCKDSLLKDVGKKQKHVILNCEYCTITYNNIYELKLHLRSVHDKEYRLTTCNVCFGKFYTEETITAHRNICIPPLDVNSCSHCDKLFTDISSLEFHIRIFHPQAQIADITSTKDDTFEGNFKCNQCERVYYSDRSLKHHIKLRHTTGEAVECDICSKMFNNKYYLAFHKKNVHSHVSWSKCDYCDKQFKSKRYIRRHIKYTHLGMQRYKCIECETLFKEKKSLRKHVRSKHPDSTAFQQCHICHKRFESAKSCKIHLKLLHSFNMNTYPCDLCSVSFSSNEALTIHLKTKHLSEDKIFKCKECDSVFKGQEKFEKHKEFCQMGPNSKKALPRCIICMKYFSTKETLKRHIKNFHAEFDSEDLANYGANRRVFTVDCGDCIKNFQDDMYFEVYQRLKQSKDAFIFKCENCKSSYNSMDYSIQRYKLMNSDITQSKMILSELCTTEMSDDEELAGFGTFHELMEAESTTNDNFEEMSVVKSEPTSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00146636;
- 90% Identity
- iTF_00146636;
- 80% Identity
- -