Esal022385.1
Basic Information
- Insect
- Euura saliciscinereae
- Gene Symbol
- -
- Assembly
- GCA_018420115.1
- Location
- JAFFZH010014206.1:46493-48947[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.048 5.4 8.3 1.8 1 23 101 123 101 123 0.95 2 18 0.00015 0.017 16.1 4.7 1 23 129 152 129 152 0.91 3 18 0.64 71 4.8 5.1 1 23 159 182 159 182 0.94 4 18 0.0023 0.26 12.4 1.1 1 23 188 210 188 210 0.96 5 18 0.00072 0.08 14.0 1.8 2 23 216 238 215 238 0.94 6 18 0.0005 0.055 14.5 0.8 1 23 245 267 245 267 0.97 7 18 1.8e-07 2e-05 25.4 0.4 1 23 271 293 271 293 0.98 8 18 1.3 1.4e+02 3.8 2.7 3 23 301 321 299 321 0.73 9 18 1.8e-05 0.002 19.1 1.0 1 23 327 350 327 350 0.97 10 18 0.00012 0.013 16.5 0.8 1 23 456 479 456 479 0.97 11 18 2.5e-05 0.0027 18.6 3.2 1 23 485 507 485 507 0.98 12 18 0.00036 0.04 15.0 4.6 1 23 516 539 516 539 0.96 13 18 0.002 0.22 12.6 1.8 1 23 545 567 545 567 0.92 14 18 1.6e-05 0.0018 19.2 2.1 1 23 572 595 572 595 0.96 15 18 0.00079 0.087 13.9 0.6 1 23 601 623 601 623 0.98 16 18 7.8e-06 0.00086 20.2 1.0 1 23 627 649 627 649 0.99 17 18 0.00056 0.062 14.4 4.1 1 23 655 677 655 677 0.99 18 18 6.9e-05 0.0077 17.2 2.3 1 23 683 705 683 705 0.97
Sequence Information
- Coding Sequence
- ATGACTGTCGAATTTACTTCTAGGTCGGATTCCGGTCGTCGTACAAATCCAGAAGATTGTACAGCCAAGGAATCGTCCAGGGCGCTGAATAAGATAAGAAATCCAAGGATGCGGACGAGGAAACAACTGCCTAAGGTGTCCAAAGCGAGTCGACGCCAAATATCATCTTCGGATTCTGGGAGTTGTGACAAAAATCCTGAAGGAGATCCACTGTTTGTTAACGACGTGTCTAATTTGCGCTACGAAGACGCCGCTGGCAGCGACAGAGCGGAAGAGGTTCTCAGCAGGAAGAAGAAAAATTTCACTTGCCACGTGTGCAACGTTTCTTTCAAGCTCGGTGGAATATACAGAAAACATATGATCAAGCACAGCGATCTCAGAGCCTTCAAGTGTAAGATTTGCGGTAAATTGTTCAAGTATAATTCAGGATTGAAGAAACACTGCAGAGAACAGCACGACGAAAGCGCACCTCTGTACTCGTGTAGAATATGCAAATTTTCTACAAAACATTACCCATATCTGCAGGAACATTTCACTCGAAAGCATACGGACGATTTTAAATACAAATGTGATTCTTGTAAGAAACAATTCAAGGTGGAAACGGACTATAAAGTACACTTAGCGGACCACGAAACGGGATTGTGCGTGTGCGACGTCTGCGGACTGACCTATCCGAACAAGAGTTCGCTCTATTATCACAGAAATTATAAACACATCGATAAAATCAAGAGCTTCGAGTGCAAAATTTGCAACAAAAAACTCCAGAATGAGAAAAACTTGGCGGTTCATACGCAGCAGCACAACGAGACCTACGTGTGCGAAGAGTGCGGCATGACGTTCGCTAGGAGATACGGCCTGACTAAACACCGACGAGTACATACCAGAGAAAAATCTCACCTGTGTTCCCTATGCGGTAAAAGTTTCGCGTGCATGGCCACGCAGAGAGTCCACTTTCTCACTCACGCCGGGGTCAGACCCTATATATGCAACGTATGCGGTTCTAAGTTCACCCAGAGATCATCGCTTATGATACACTGGAAAAAGAAACACCCAGACGCCAGCGAACCCCCGCCTCCCGTCATCCTGTCCAATATACTCGAGACCATCAAGAAATTGCGTAAGCATTTAAAGAAGGACGAAGATAACTGTAGATATGGGCACAAATTAACACGTCGGAAAAGACTTTCACAGCCGAGAAGAGTGAATGTGGAGAGGAGATGTGTTGGAGACGGAGACTCTCCGAAGGACCCCGAAGAATCAATAGAGGCGAGGATTTCTGCCAGGGAGAAAGAAAACGTGGAAAAATCTGTCGACGAGGAATCGAAGCCGAAAGGTGTTCTGTACAAGAAGTTAACGGACGGAAATTACACCTGCGACATATGCCAAGCTAGTTTTGAACAGAAGAGTAAAATAATGAGGCACATTACGAGCAAGCACAGTTTTCACAGACCGTTCAAATGCACGGTGTGCTCAAAGGCGTTTAAATACAAGTGCGATCTCAAAGCTCACAGAATAGTTCACGAGGATATTGATAACAGCGTGTTACATAGATGTGACAAATGCGATTACGTTACTAAAACTAAAAACAATCTCAAGTCACACTACATAAGAAAACATACCGACGATTATAAATTCTCTTGCGAACATTGCGGCAAGAGGTTTAAGATGGAATGGGACCTTAAATTCCACGTCGGTACGCACGGAAGCTCTCAACACATGTGCGATATCTGCGGACGCTTCTATACCAGCAGCTACTCGCTATCTAAGCACAGAAAAGTCGCTCATCTGAACGATTACAAGTATCAGTGCAACGTTTGTAACAAGAGGCTTCTGACGCAGGAGAATCTCGATAATCACATGCTACAGCATAATCAGACTTACAAATGCAAGGAGTGCGCAAAAGTATTCGCTTCCAAGAGGTATCTCGCCACTCACCTGACCACTCACACCGGAGTCAAACCGTACACTTGTCAAGTCTGCGAGAAAAACTTCAGAACTTCGCATATGAGGAATACGCATCTGCTGACTCACTCCGCCGAACGTCCTCACATATGCGATCTTTGCGGACAGGCTTTTAAGAGGAGGTACTACATGATCGAACACCGGAGGAAACATCCGGACGCACATTTATCCTCGCCGCCTATACCTTTGGGCAGGAACCGAGGGAACTCGGCGCAGGAAGCTCCTACGATTTAG
- Protein Sequence
- MTVEFTSRSDSGRRTNPEDCTAKESSRALNKIRNPRMRTRKQLPKVSKASRRQISSSDSGSCDKNPEGDPLFVNDVSNLRYEDAAGSDRAEEVLSRKKKNFTCHVCNVSFKLGGIYRKHMIKHSDLRAFKCKICGKLFKYNSGLKKHCREQHDESAPLYSCRICKFSTKHYPYLQEHFTRKHTDDFKYKCDSCKKQFKVETDYKVHLADHETGLCVCDVCGLTYPNKSSLYYHRNYKHIDKIKSFECKICNKKLQNEKNLAVHTQQHNETYVCEECGMTFARRYGLTKHRRVHTREKSHLCSLCGKSFACMATQRVHFLTHAGVRPYICNVCGSKFTQRSSLMIHWKKKHPDASEPPPPVILSNILETIKKLRKHLKKDEDNCRYGHKLTRRKRLSQPRRVNVERRCVGDGDSPKDPEESIEARISAREKENVEKSVDEESKPKGVLYKKLTDGNYTCDICQASFEQKSKIMRHITSKHSFHRPFKCTVCSKAFKYKCDLKAHRIVHEDIDNSVLHRCDKCDYVTKTKNNLKSHYIRKHTDDYKFSCEHCGKRFKMEWDLKFHVGTHGSSQHMCDICGRFYTSSYSLSKHRKVAHLNDYKYQCNVCNKRLLTQENLDNHMLQHNQTYKCKECAKVFASKRYLATHLTTHTGVKPYTCQVCEKNFRTSHMRNTHLLTHSAERPHICDLCGQAFKRRYYMIEHRRKHPDAHLSSPPIPLGRNRGNSAQEAPTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -