Elap004112.1
Basic Information
- Insect
- Euura lappo
- Gene Symbol
- -
- Assembly
- GCA_018257835.1
- Location
- JAEUYN010000974.1:52436-55586[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.11 15 7.1 0.8 2 23 160 182 159 182 0.90 2 14 0.14 18 6.8 0.9 1 22 196 217 196 219 0.88 3 14 0.021 2.8 9.3 3.1 1 23 225 248 225 248 0.97 4 14 6.5e-05 0.0085 17.3 2.8 1 23 256 279 256 279 0.96 5 14 0.041 5.4 8.4 2.4 1 23 288 311 288 311 0.93 6 14 6.6e-06 0.00086 20.4 0.7 1 23 317 339 317 339 0.97 7 14 3e-05 0.004 18.3 0.5 3 23 347 367 346 367 0.97 8 14 4.9e-08 6.4e-06 27.1 2.4 1 23 372 394 372 394 0.98 9 14 2.2e-05 0.0028 18.8 2.8 1 23 400 422 400 422 0.99 10 14 7.6e-06 0.00099 20.2 3.9 2 23 429 450 428 450 0.96 11 14 3.1e-05 0.0041 18.3 0.2 2 23 457 478 456 478 0.96 12 14 3.4e-05 0.0044 18.2 0.1 3 23 486 507 484 507 0.92 13 14 0.00016 0.021 16.0 1.7 3 23 519 539 517 539 0.96 14 14 0.00013 0.017 16.3 1.3 2 23 546 568 545 568 0.95
Sequence Information
- Coding Sequence
- ATGTCTGGGGCGAGGACTTCATGTCCCACTGAAAGATTTGGGGCGTTAGAACTCAGCGGACAGAGAGATTTCGATCCTAAGCAGGTCGAATGCTTTCTGAGGGGTCAAAACGACATTGAAAATGACTCCAAATCAGACACAGGCAGTAAATTGCTGTGTCAAATTTGTAAATTAAATTTTGACGGTCCGCTTTCTAGCCACAGACTATTGGAACACGTTCATTCTGTCCATAGTTTTAATATTTATGACAAAGAGAAAGAGATTCATAGAAGCTCCCGCGAATCGGAGTCCAAAAGCTCGCTTATGGAAGAAATTGATGAGAAAAAACGGGAGATGCGAAGCGATTCGAAGAGAAATACAGAATTTGAATTCAAAGCTGTAAAAGTTGAGGTTGAAGATGACCTCGAATCGGAGAGCCTTGATTTGACGTTGAAAAAAGCTTCGCCGAACCGAAAAGAGGGGGAAAATAATTCTCTGAAGTGTTATATTTGCTCCAAAGTATTCAATTGGACGAGGGAATTCAGGTCGCACTTGATCAACAGTCACGGAGATGAATTGACCGAGAAAGACATCGACGACCTGTTTTACAGATGTAAAAAGTGCGCGGCTACATTCCCGAATTTGATACTGCTTAGGGGACATTTTTTCAATAAACACGTCACGCTTATCGTGTACAGATGTTTAGTCTGCCACGTGATATCTAAGTCTAAAAAAACGTTGAGAATTCACTACAATAGTTATCACGCGCAGAACAGCGAAGGTCCGCATTTTTGTCACGATTGCGGGAAGGAAGTGACGAGCCTCAAGGCTCTGAGAACCCACATCAGAGTCAAGCACGGTGAACTGAAAAACAAACAGGGATTCAGGTGCAGGCTTTGTCAGCAGAAATTCGACTCCAAAGAGAATAGAAAACTTCATTACGAGGAAAACCACCTCGGAGAAAGCCTCTTCATGTGCAAGGACTGCGGTAAAGGATTTTCGAGCAAATCTGGCCTCTATGGACATCGTCAGTTGCACAAAAAAGACCAACCCTCCGCTTGTCCTTACTGTGAAAAAATATTCAGCCGAAGGGACAGCTACCACGAACACATACTGATCCACGTCGGTCCGAGGCATCGGTGTCCCCACTGTCCCAAGGAGTTTGTTCAGCGCAGTAATTTGGTCCGTCACATCCGCATCCATACTGGCCAGAAGCCTTACACGTGTACCTACTGCGACAAACGCTTCTCAGACAAGGGTGCATGCAATTCTCACATCCGTGTCCACACCAAAGAAGAACAGTGCGCCTGTCCTTACTGCGGTCAGACCTTCACCAAGAAGCAGAAGCTGAAGTATCACATAAGAAAACACACCGGGGAAGGATTGATAAGCTGCGAGATATGCTCAAAGACGTTTACCAACGCTTTTGCGCTCAAGGAACACAGGGCTATCCACGATAGGCAGACCCAAACCATCTGCGTCGAGTGCGGAAAGGCCTTTAATAGCGAAAAATATTTGCAGAGGCACATAGCTCTCGTTCATCAGGATGTACAGGATTCTAGGAACGCTGTTAACTGTCCGGTCTGTGAAAAGACGTTCTATCACCAGACCAGGTTGAAGTCCCATCTCGTCACACACCTGGGGAAAAAACACTTGCAGTGTTTAATTTGCGAGAAACGATACAGCAGCCCGAAATCCATGCGCAATCATATGAAGCAGCGTCACGATTTGACCCCGGATCAACCGGAATATGCGAAATCTATTCGTTCCAAGATCGCTAATACCCAGAAATCGGTCGACTCGACGCAGGTAGCGGAGGATTCTCGCTCTTCTGATGCTAAATTTTTTACCAACAAGGAAATTACTGGAGTTGTTCTGAGCAACGGAGAAGATTCTGGAGACAGTAGCAGTACTCGCGATAAAAAGTCGAGCGTCTCTTCGTCGGGGGACGAGGAGGCGGCTTTGATGAAAAAAAAACTTAGAGATAATCTTAGAAAAGTTGTGAAACCGAAAGAGGAATACGAATTTATCGACATAAATGGTCCGAACGTGTCTTCAGAATACGGGAATACCGACGGAGATGGAAGTTTGCGTATTAAAACCGAAAATATGATGGAATATGAGTATTGCAAGGTAGAACCTGAAACTGAATTGAATTTAGCCAGCGCGAACGGAACCAACGAAATTCTGCATGATATCAAAAAAGAGATCGTAGATCCTCTTTATGAGGGTTTCAATCAAATTGAGGATAGGGAACCGAGTCCTATGCAGCCACAAGAAAACTTGGGTGCAATTATTGAAGATCGTATTAAGACGGATGAAGAACCGATCGAAAGTGAGATCGGTGATAATTGTAGAGAAATTGTGTCTGAATTGAAAGACATTATAGATACAAGGTTGAGATCGGAGTCAGAATCTTCCAAAGATATCAGCCGAAGAAGAAAACAGTTAAGAACGCCTAAGAAATACGTGTCTCCCGTCGTTTCATTATGCAGGATAGATGATAAGTTGAAGAATGTTTTACCAAAAAGGGAAAGAGTCGAAGCTATTGCACGATCTTTGAAGAATTCGACAACTTTGAAGAAAGAACTTTGTTGA
- Protein Sequence
- MSGARTSCPTERFGALELSGQRDFDPKQVECFLRGQNDIENDSKSDTGSKLLCQICKLNFDGPLSSHRLLEHVHSVHSFNIYDKEKEIHRSSRESESKSSLMEEIDEKKREMRSDSKRNTEFEFKAVKVEVEDDLESESLDLTLKKASPNRKEGENNSLKCYICSKVFNWTREFRSHLINSHGDELTEKDIDDLFYRCKKCAATFPNLILLRGHFFNKHVTLIVYRCLVCHVISKSKKTLRIHYNSYHAQNSEGPHFCHDCGKEVTSLKALRTHIRVKHGELKNKQGFRCRLCQQKFDSKENRKLHYEENHLGESLFMCKDCGKGFSSKSGLYGHRQLHKKDQPSACPYCEKIFSRRDSYHEHILIHVGPRHRCPHCPKEFVQRSNLVRHIRIHTGQKPYTCTYCDKRFSDKGACNSHIRVHTKEEQCACPYCGQTFTKKQKLKYHIRKHTGEGLISCEICSKTFTNAFALKEHRAIHDRQTQTICVECGKAFNSEKYLQRHIALVHQDVQDSRNAVNCPVCEKTFYHQTRLKSHLVTHLGKKHLQCLICEKRYSSPKSMRNHMKQRHDLTPDQPEYAKSIRSKIANTQKSVDSTQVAEDSRSSDAKFFTNKEITGVVLSNGEDSGDSSSTRDKKSSVSSSGDEEAALMKKKLRDNLRKVVKPKEEYEFIDINGPNVSSEYGNTDGDGSLRIKTENMMEYEYCKVEPETELNLASANGTNEILHDIKKEIVDPLYEGFNQIEDREPSPMQPQENLGAIIEDRIKTDEEPIESEIGDNCREIVSELKDIIDTRLRSESESSKDISRRRKQLRTPKKYVSPVVSLCRIDDKLKNVLPKRERVEAIARSLKNSTTLKKELC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00719628;
- 90% Identity
- iTF_00719628;
- 80% Identity
- -