Elap024951.1
Basic Information
- Insect
- Euura lappo
- Gene Symbol
- su(Hw)
- Assembly
- GCA_018257835.1
- Location
- JAEUYN010001923.1:44039-48794[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.003 0.39 12.0 0.1 1 20 63 82 63 84 0.95 2 13 2.8e-05 0.0036 18.4 0.5 1 23 344 367 344 367 0.95 3 13 0.0094 1.2 10.5 3.3 2 23 374 396 373 396 0.95 4 13 5e-05 0.0065 17.6 2.7 1 21 402 422 402 423 0.95 5 13 6.6e-08 8.7e-06 26.7 3.2 1 23 434 456 434 456 0.98 6 13 0.00028 0.036 15.3 2.7 2 23 467 488 467 488 0.98 7 13 0.0027 0.35 12.2 0.4 2 23 495 516 494 516 0.97 8 13 5.9e-05 0.0078 17.4 4.5 1 23 522 544 522 544 0.99 9 13 1.6e-05 0.0021 19.1 2.1 1 23 550 572 550 572 0.94 10 13 3e-06 0.0004 21.4 1.1 1 23 578 601 578 601 0.95 11 13 4.3e-05 0.0057 17.8 0.5 1 23 607 629 607 629 0.91 12 13 1.8e-07 2.4e-05 25.3 1.4 1 23 635 657 635 657 0.98 13 13 4.4e-07 5.7e-05 24.1 2.1 2 23 664 686 663 686 0.97
Sequence Information
- Coding Sequence
- ATGTCGCAAATAATAGAAATCGTTAAGATCGAGCATCCCGCCTCAGGGAAAGGGGAGGAAGTCGAAATACTTTTTGGTGACTCACAGAACGAAAATGACGCACAGGCTGCAGACGCTCAGGAGGAAACGATATTCGGCGGACAGTCCATTTCGCAGGATTCTCAGATTATCGAGATCGTGACAAACTACGAGTGTGTTACATGCCGTCGTATATTCACATCGGAAGACATGCTGAAGGACCATCTTGACGTGTGCAGAGACGAGGATGACCGCTCCGATACCCTTGAGATTGGACAAATAGCAGATTATGACTCCGAAGACGAGGAGTACGTCGACGATCCCGACGAGGACTCCAAAAGTTCGATGGAATTCGAAGTCTTTCGGAAGTCTTCGGAGTCTCCGGAAGTCTTTGGAAGTCTTCAGTTAGAATTCGAAGTCTTTGGAAGTCATCGGAAGTCTTCGGAGTCTCCGGAAGTCTTTGGAAGTCTTCAGTTAGAATTCGAAGTCTTTGGAAGTCATCGGAAGTCTTCGGAGTCTCCGGAAGTCTTCGGAAGTCTCCGGAAGTCTTTGGAAGTCTTTGGCCCGAAGTCTTTGGAAGTCTTTGGAAGTCTTCGGTTAGAATTCGAAGTCTTTGGAAGTTCGAAGTCTCCGGAAGGCCCGGAAGTCTTTGGAAGTCTTTGGAAGTCTTCGGTTAGAATTGAATCTTTGGAAGTCTTTGGAAGTCTTCAGTTAGAATTCGAAGTCTTTGGAAGTCTTCGGAAGGAGTCTCCGGAAGTCTTTGGAAGTCTTTGGCAGTCTTCAGTTAGAATTCGAAGTCTTTGGAAGTCATCGGAAGTCTTCGGAGTCTCCGGAAGTCTTTGGAAGTCTTCGGAGTCTCCGGAAGTCTTCGGAAGTCTCCGGAAGTCTTTGGAAGTCTTCGGTCGAACGACGCCAAAGAACAACAACGGCTCAGCGGCGATAAAGCCGGTAGCTGCGGGGAAGTGCCACTGCTGCGGCGAAGACTCGGAAACAGCTCACACAGTAGGAAATTTCCAATGCGAGAGCTGCTCGTTTTCGTTCAAGAGATCCTCCGCCCTCGATAGACACATGGTCGTCGTTCATTACCGGGAAGAGTCCCTGATTTGCAAATCCTGCGGCATAACTTGCGACAATAAGAAGCTCCTTGAGAAGCACCATTACACCGTTCACGCCAAGCACCAAATATTCAAGTGCGAACGCTGCGACAAATATTTCTCGAGGAAATACCACCTGGACCGTCACGTCATGCAGACAGGATGCGACGGAGCTTCTCGAACCAGTTATTCCTGCCAGGTTTGCCACAAAGTATTCACGAGGAAAGACAACTTGCGCGAGCATTTAAGAATGCACGCAGGGGCTCCGCAGAGGCAGAAGAAGGCGGAGTGTTCTCATTGCTCAAAAAAATTCTACACCCTTCAGCAGTTGGTCATCCACGAACGAACTCACACGGGGGAGCGTCCGATTTCCTGCGATCTTTGTAACAAGACTTTTCTCTCCGCTCCGGCAATGAAGAAACATCGACGGGTTCATACGGGCGAAAAACCATTCCAGTGTAAATTTTGCGAAAAAAGATTCGCAGCTCGTGAAACTTTGAATCGTCATCACCGCACGCACACCGGAGACAAACCCCACGTCTGCCAATATTGCGGAAAGACGTTCATCCAAGCCGTTCAACTGAGAGCGCACGTGTTTCATCACACGGGAGAGAATGCATTTTATTGCGAAGTGTGCGGAAAGGCGTTCAACCGGAAGACCAGACTGACGGTCCACATGAAATTCGTTCACGAAGGAGCGACTCCGTTCCAGTGCGACGCTTGCGACAAGTCGTTCATTCGCAAGGAGGATCTGTCCAGACATTCCGTACTTCACACCGGGATTAAACCACACAAATGCGACAAGTGTCCGAAGTCTTTTGCGGTGAAATCTGCGCTTCGCGTTCACATGAACACTCACAGACGCGAGCTGCCGCAATCGTGCGACGAATGTGGACGCGCTTTTATAAGACAAGATTGTCTGATGCGGCACATGAGAACCAAGCACCGAGACATGCTAGAGGACGCCGTTGCCGAGGCCGAGAAGCGAAGACTGCAGAAACAGCTGTTCAAGATCGCTTCGAGCGCCGCGGCAAAGTCCAAGAGCGTAAAATCCTCCGTCACAACGCTGTCGCAAGACAAATTACTCAAAGCTATCGTAGAACTTCTGACTCTGCTAGTAGAGGAGGAAACTTTGCAGGCGTTCGGATGGCCAGAAGCGCCTATCCAAGACATTCTCGAGGCCGTGATCAAGCGCTGCGGTCATCAGCCGATCCCGTCCGACAGTGATTTTGTGCTGGCTCAGCGTCTGAGAGAGAATGTCAAGATATTATTCACCGTGGTGATAGAAGACGAGACTGTGAAATCGCTCTTGACCACGCAAACCGTAGACGAAGTAATTCTGCATGTATTAAAATTGTCCAAAGAAAAATAG
- Protein Sequence
- MSQIIEIVKIEHPASGKGEEVEILFGDSQNENDAQAADAQEETIFGGQSISQDSQIIEIVTNYECVTCRRIFTSEDMLKDHLDVCRDEDDRSDTLEIGQIADYDSEDEEYVDDPDEDSKSSMEFEVFRKSSESPEVFGSLQLEFEVFGSHRKSSESPEVFGSLQLEFEVFGSHRKSSESPEVFGSLRKSLEVFGPKSLEVFGSLRLEFEVFGSSKSPEGPEVFGSLWKSSVRIESLEVFGSLQLEFEVFGSLRKESPEVFGSLWQSSVRIRSLWKSSEVFGVSGSLWKSSESPEVFGSLRKSLEVFGRTTPKNNNGSAAIKPVAAGKCHCCGEDSETAHTVGNFQCESCSFSFKRSSALDRHMVVVHYREESLICKSCGITCDNKKLLEKHHYTVHAKHQIFKCERCDKYFSRKYHLDRHVMQTGCDGASRTSYSCQVCHKVFTRKDNLREHLRMHAGAPQRQKKAECSHCSKKFYTLQQLVIHERTHTGERPISCDLCNKTFLSAPAMKKHRRVHTGEKPFQCKFCEKRFAARETLNRHHRTHTGDKPHVCQYCGKTFIQAVQLRAHVFHHTGENAFYCEVCGKAFNRKTRLTVHMKFVHEGATPFQCDACDKSFIRKEDLSRHSVLHTGIKPHKCDKCPKSFAVKSALRVHMNTHRRELPQSCDECGRAFIRQDCLMRHMRTKHRDMLEDAVAEAEKRRLQKQLFKIASSAAAKSKSVKSSVTTLSQDKLLKAIVELLTLLVEEETLQAFGWPEAPIQDILEAVIKRCGHQPIPSDSDFVLAQRLRENVKILFTVVIEDETVKSLLTTQTVDEVILHVLKLSKEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -