Elap007496.1
Basic Information
- Insect
- Euura lappo
- Gene Symbol
- -
- Assembly
- GCA_018257835.1
- Location
- JAEUYN010002349.1:263029-266871[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0015 0.2 12.9 1.8 2 23 9 30 8 30 0.96 2 17 1.3e-05 0.0017 19.4 1.4 2 23 94 115 93 115 0.96 3 17 0.00034 0.045 15.0 2.1 1 23 119 141 119 141 0.98 4 17 0.00015 0.019 16.2 1.0 3 23 149 169 148 169 0.97 5 17 5.9e-05 0.0078 17.4 3.0 2 23 176 197 175 197 0.96 6 17 0.1 13 7.2 0.1 2 23 235 255 234 255 0.94 7 17 1.9e-07 2.5e-05 25.2 1.1 2 23 262 283 262 283 0.97 8 17 0.00048 0.063 14.5 2.3 1 23 402 424 402 424 0.98 9 17 0.00056 0.074 14.3 0.9 2 23 432 454 432 454 0.94 10 17 0.0005 0.066 14.5 2.6 1 23 460 482 460 482 0.92 11 17 0.13 17 6.9 1.7 1 23 486 508 486 508 0.97 12 17 3.1e-05 0.0041 18.3 0.9 3 23 516 536 514 536 0.97 13 17 2.4e-05 0.0031 18.6 0.1 1 23 542 564 542 564 0.98 14 17 0.056 7.4 8.0 0.9 1 23 570 592 570 592 0.95 15 17 3.4e-07 4.4e-05 24.4 0.2 2 23 599 620 598 620 0.97 16 17 3.7e-07 4.8e-05 24.3 1.2 1 23 626 648 626 648 0.98 17 17 1.3e-06 0.00016 22.7 2.5 1 23 654 676 654 676 0.99
Sequence Information
- Coding Sequence
- ATGCACGATGATAATCGTGTACTCAACTGCGAGTACTGCGATTTTGAAACTAAGAATAACACCAGTCTTCGGACACACAGGAAATTACATACTAATCAGTACAGTATAAGAGCTGAGAGGATATTGTTGCCTAAGTCGACAGATCCTCTGTCCATTGAAGAAAAAGGAATCGGCAAGAATTTGAAAAAGAGACAAATTTCCGACTTTTTACCTGAGATTGTGGTTCATGAAAAAACTAGTAAAATTAAACCGAAAGTTATTATTCCCTCGGGGCCTATAGAATGTCAGATATGTCGCAAGGTATTCAAGAAGAAAAAATACCTCAGAGTACACATGACCCTGCACGGAGCTCCCCACGTCTGTCACGTATGTGGCGCTAAGTTAACTTCGGAGTATTATCTGAGGATACACGTCAGGAGACACAACAAGGAGTTTACAGAATTTTGCAAAGTATGTAACAAGGGGTTTTACCTTAAGGCGACGCTGAAAACTCACATGAGCGTACACACCGAGGATAAACCCTGTGTTTGCCAAGTCTGCAAGAAGCAGTTTGGAAACAAAGTCTACCTGAAAACCCACATGAAAATTCACAGCAGGCCCGAAACGAGGAAAAAATTCACTTGCGATATTTGTAAATTTGAAACTTTCTACAGCTACTGTCACAAGGAACATATGTGGACGCACACGGGGGAGGGACAGGTGCCGTGCGAGGTCTGCGGAAAACTCATTCGGAGACAGTACATGAAGATTCATATCCGTATTCACACTGGTGAAAAACCGGAAGTATGCGAATATTGCGGAAAAGCCTTTAGCTCTAGGAAGTATCTGGTCAAGCACAGGAGGACTCACACCGGGGAACGACCCTACCGGTGTGAGTTTAACGAAGACGGTGCCGACGGTGTCATTACCATTGAATATACGAAAACTGAACCAGAGCAGATTTTGGATGAGACTGAATACGCGGAATATACATCACAAGATACTATAGAAGAGGAGTATCGCGTAGATATCAATTCTCAAGCCGCCACGGAAGAGATTGTAGACCAGCATGAGGAAGTGATAGAGAGTTTAAATATCGTCCGTAACGATTCCGACAAACAAAAACTTGAGACGGAAACGGAGACGGAGACGAAAAACAAGAGACCAAAACGGCGAGCGAAATACCCTGAGAGAAAATCTTCTTCTTCTACCGTACAAACTCATTACCAATGCGATCTGTGCGGCAAAAGAATTAGAAATCGATTATCGTTCACCAAACACAGACAAAATCATGACAGGAAAATTCCGGTCAATCGATGCCAAGATTGCGACAAGGAATTTTCGGACGATGAAAAATTCGAGAAACACAGGGTCAAAGTTCACCAGGAGGACAGACCCTTTCCTTGCATATTGTGCGGCAAGTGTTTCAAAACTGAAGAGTTTTTGAAAACTCATCTGAAACAGCACAACAAAAGATTTACCTGCGATATCTGCGGCGTATGCAAAGTATCCGGTTACGATTTAAGACTTCACAAGAAAAAACATAATCAAGAGTACGTCACCTTTTGTGAGATTTGTAAAAAGGGTTTTTACACAAATCAGACGCTGGAACGTCACGTGTTGACTCACACCGGTGAAAAACCGTACGCTTGTAAAATTTGCAATACTCCTTACGCCAGCGCGGCGTATTTGAATCTGCACATGAAGTCGCACGGACAGAGGGAAAAGCACAAATGTACCGTATGCGATTTTGAGAGTTTTTGGAAAGCGGCGCTCAAGGTTCACATGAAAATTCACACGGGGGAGAATCAAATAACTTGCGAGATATGCGGTAAATCGGTATCCAGCAAGACGTATCTTCAGGTTCACATGAGGATACACTCTGGCGAAAAACCTCACGTCTGCGAAGTCTGCGGAAAGGCTTTCAGCGTCAGAAAATATCTCACCGTTCATCAAAGAACTCACACCGGCGAACGTCCCTACGAGTGTAAATATTGTCAGAAGAGATTCACGCAACAGGGATCTATGAACTCACACATCAAATCGCACCCCGAGGCTAACAAATAA
- Protein Sequence
- MHDDNRVLNCEYCDFETKNNTSLRTHRKLHTNQYSIRAERILLPKSTDPLSIEEKGIGKNLKKRQISDFLPEIVVHEKTSKIKPKVIIPSGPIECQICRKVFKKKKYLRVHMTLHGAPHVCHVCGAKLTSEYYLRIHVRRHNKEFTEFCKVCNKGFYLKATLKTHMSVHTEDKPCVCQVCKKQFGNKVYLKTHMKIHSRPETRKKFTCDICKFETFYSYCHKEHMWTHTGEGQVPCEVCGKLIRRQYMKIHIRIHTGEKPEVCEYCGKAFSSRKYLVKHRRTHTGERPYRCEFNEDGADGVITIEYTKTEPEQILDETEYAEYTSQDTIEEEYRVDINSQAATEEIVDQHEEVIESLNIVRNDSDKQKLETETETETKNKRPKRRAKYPERKSSSSTVQTHYQCDLCGKRIRNRLSFTKHRQNHDRKIPVNRCQDCDKEFSDDEKFEKHRVKVHQEDRPFPCILCGKCFKTEEFLKTHLKQHNKRFTCDICGVCKVSGYDLRLHKKKHNQEYVTFCEICKKGFYTNQTLERHVLTHTGEKPYACKICNTPYASAAYLNLHMKSHGQREKHKCTVCDFESFWKAALKVHMKIHTGENQITCEICGKSVSSKTYLQVHMRIHSGEKPHVCEVCGKAFSVRKYLTVHQRTHTGERPYECKYCQKRFTQQGSMNSHIKSHPEANK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -