Elap004846.1
Basic Information
- Insect
- Euura lappo
- Gene Symbol
- -
- Assembly
- GCA_018257835.1
- Location
- JAEUYN010000485.1:86744-94869[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 9.6e-05 0.013 16.7 1.4 1 23 461 483 461 483 0.96 2 18 2e-05 0.0027 18.9 1.9 1 20 489 508 489 511 0.94 3 18 3.2e-05 0.0041 18.2 0.7 1 23 517 539 517 539 0.98 4 18 7.8e-05 0.01 17.0 4.4 1 21 545 565 545 567 0.95 5 18 2.4e-05 0.0032 18.6 4.6 1 23 573 595 573 595 0.99 6 18 2.4e-05 0.0031 18.6 5.3 1 23 601 623 601 623 0.97 7 18 9.2e-06 0.0012 19.9 7.1 1 23 629 651 629 651 0.97 8 18 8.9e-08 1.2e-05 26.3 2.7 1 23 657 679 657 679 0.98 9 18 6.6e-05 0.0086 17.2 6.7 1 23 685 707 685 707 0.97 10 18 2e-05 0.0027 18.8 5.8 1 23 713 735 713 735 0.98 11 18 5.4e-07 7.1e-05 23.8 2.9 1 23 741 763 741 763 0.98 12 18 8.1e-06 0.0011 20.1 7.8 1 23 769 791 769 791 0.98 13 18 2.6e-05 0.0033 18.5 9.1 1 23 797 819 797 819 0.98 14 18 3.3e-05 0.0044 18.2 7.5 1 23 825 847 825 847 0.98 15 18 0.0016 0.21 12.9 8.8 1 21 853 873 853 875 0.94 16 18 1.2e-05 0.0016 19.5 0.4 1 23 881 903 881 903 0.98 17 18 0.029 3.8 8.9 4.5 1 23 913 935 913 935 0.98 18 18 4.7e-07 6.2e-05 24.0 1.3 1 23 941 963 941 963 0.97
Sequence Information
- Coding Sequence
- ATGAACGGGGAGCAGCATGCACTGCCAGCGACTACGCAGGGGCAGCAAGAGGAAGTAAACGTGGGTCAAACTGGTCGCCCTCAATATACGAGCGGATTGGCGACTGGATCCGGTATTGGAAACGTAGGAAGTATCCCACATTCTTCGGCAGATCTTCGCGTAGGTACAGCAGTAGCCTTAGCCTCTTCGGTAGCTAAATATTGGGTCCTGACCAATCTATTTCCTGGGGCGCCGCTTCCTCAGGTTTCCGTATACCATCATCCCCATCACAATTCCTCGCATAGAAACACGACCGGTGATTCAACGAGCAAGGAATCATCCGTCGCGGCGGCAGCTACAGCCTCGCCGTTGAGCCAAGAAATGGCATTGGCTTCTAATTCACATCAACAGCAGGCATCTACTTCGCACCATCATCAGCAAAATCCGGTTAATAACAACAATCAACACAACTCCTTACACCCAAATGCACAGATTCCAGTGTCGCTGCCGGGTCTGAGTCTAGACGGAACTCACATTTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGATGCAGCGATAATCAAGTTCATTGTCAAGTACAGTGCGATTTACAGCTGCAACCCCAGTCTCAGGGCGAGATGCAACAGAATTTGATGCAACAGCAACAGATCGGAGTAAATATCGGGGGCAACGGTAACGCCGATGGGAATAATCAGAACAATTCCGACGGCATGAAAACTGAGAAAGATAAGGAAATGAGGCAGCACAGTATGGCACAATTCCAGTTACCCGATCTCAAACCGGGAGGACACATGATGGATGTCAGAACAGCCGACGGTTCAGTGGTGAAAATAAGCGCTGGAAGCGAGCAGGATCTCGCCAAGACACTGGGCGTTGAGATGGTGCAAAATATGTACAAGGTGAACGTCGAGGACATAAATCAGCTCTTGGCATACCACGAAGTGTTTGGTAAATTGCAGAGCGAAATAGCAGCCGGAACGACCCTGGTGGGGGGTACGGTTCCGACCCAAACTGTGACGACCATACAGAACGGAACTCCGATACTGCAACAAGTGCAATTGAATAAATTTGATATTAAAACCAGCGACGGAGAAGCTACCCCTGGACCAAGCGCTTCTCCGGTCTCTGTTGGCAGCCACGCCTGCGAAGTATGCGGAAAGATATTTCAATTCCGATATCAACTTATAGTGCATCGCAGATACCACACCGAACGAAAACCCTTCACCTGCCAGGTATGCGGTAAAGCATTCACGAATGCCAACGACTTGACTCGTCATGGTAAATGCCACCTGGGAGGATCGATGTTCACCTGCGCTGTTTGCTTCCACGTATTTGCAAACGCTCCGTCGCTAGAACGACATATGAAAAGACACGCGACCGACAAACCGTACAATTGTACCGTTTGCGGAAAGAGTTTTGCGAGGAAGGAACACTTGGATAATCACACCAGATGTCACACGGGTGAAACGCCTTACAGATGTCAGTATTGCGCCAAGACGTTCACGAGGAAGGAGCACATGGTAAATCACGTTCGTAAACACACGGGGGAGACTCCTCACCGTTGCGATATATGCAAAAAGAGTTTTACGAGAAAAGAACACTTCATGAATCACGTTATGTGGCATACGGGAGAAACTCCTCATCATTGCCAGGTCTGCGGAAAGAAATATACAAGGAAAGAACATCTGGCTAATCATATGCGATCCCATACAAACGATACGCCCTTCCGTTGTGAAATTTGTGGTAAGTCGTTCACGCGGAAGGAGCACTTCACGAACCACATAATGTGGCATACAGGCGAGACTCCTCATCGATGCGACTTCTGCTCAAAGACGTTTACGAGGAAGGAGCACCTGCTTAATCACGTTCGACAGCACACGGGTGAGTCCCCACACCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAATCACATCCGCCAACACACAGGAGAGACGCCGTTCCGTTGCCAGTACTGTCCTAAGGCGTTTACGCGCAAGGACCATTTGGTAAATCACGTCAGGCAGCACACGGGTGAGTCTCCGCACAAGTGCCAGTATTGCACCAAATCGTTCACGCGGAAGGAACATTTGACAAATCACGTGCGTCAACACACAGGCGAATCGCCACACCGATGTCATTTCTGCTCCAAGTCATTTACTCGAAAGGAACATCTGACTAATCACGTTCGTATTCATACCGGAGAATCGCCTCACAGATGCGAATTCTGCCAGAGGACATTCACCAGGAAAGAACACCTCAATAATCACCTTCGCCAACACACCGGCGAATCTTCGCACTGCTGCAACGTCTGTTCAAAACCTTTTACAAGAAAAGAGCACCTCGTCAATCACATGCGATGTCACACCGGCGAACGTCCTTTTGTCTGTACGGAATGCGGCAAGAGTTTTCCACTCAAGGGCAATTTACTGTTTCACATGCGATCGCACAACAAGGGAAGCAACGCCGAGAGACCGTTCAGATGCGACCTTTGTCCCAAAGATTTTATGTGCAAGGGTCACCTAGTGTCTCACAGAAGATCTCATTCGGACGAGAGACCCCACAGCTGTCCGGATTGCGGCAAAACGTTTGTCGAGAAAGGAAATATGCTCAGGCATCTCAGAAAACACGCGGCCGAAGGACCACCCACGCAAGTTACCACACCCTCGGCTATACCGCAGCCTGGAGTTTTACCCATTCCAACAGCTGCTGTGCTGGTTGGACACCCGTTGGCACCTCCGGCGCCTCCGGTTGTTCCTCAGCATACCGTCGTCGTGCCGACACCGCCGGGAGTATTGGCGTCGTATTGA
- Protein Sequence
- MNGEQHALPATTQGQQEEVNVGQTGRPQYTSGLATGSGIGNVGSIPHSSADLRVGTAVALASSVAKYWVLTNLFPGAPLPQVSVYHHPHHNSSHRNTTGDSTSKESSVAAAATASPLSQEMALASNSHQQQASTSHHHQQNPVNNNNQHNSLHPNAQIPVSLPGLSLDGTHISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCSDNQVHCQVQCDLQLQPQSQGEMQQNLMQQQQIGVNIGGNGNADGNNQNNSDGMKTEKDKEMRQHSMAQFQLPDLKPGGHMMDVRTADGSVVKISAGSEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGGTVPTQTVTTIQNGTPILQQVQLNKFDIKTSDGEATPGPSASPVSVGSHACEVCGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFTNANDLTRHGKCHLGGSMFTCAVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGESSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVTTPSAIPQPGVLPIPTAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVLASY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00047431;
- 90% Identity
- -
- 80% Identity
- -