Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 2.4e-09 2.1e-06 28.1 0.0 1 42 20 62 20 65 0.91

2 2 8.3 7.2e+03 -2.4 0.0 16 22 137 143 134 143 0.80

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	2.4e-09	2.1e-06	28.1	0.0	1	42	20	62	20	65	0.91
2	2	8.3	7.2e+03	-2.4	0.0	16	22	137	143	134	143	0.80

Coding Sequence: ATGCCCCGAAAATATACTAAGAAAAACACCGAAGCCGCTTCTAAGCGGGGGCAGTGGACTGAAGAGAATCTGCGGGAGGCTATAAACAGACTAAATGCTGGAGAAATAGGTGTCAATGAGGCATCCGAATATTACAGTATACCGTCACGAACTCTACGACGTCGAAGAAGTTCCGGTATTCTTGAAAAGCTTCCGCTAGGGCCACAAGGATCACTTGGTCCAGAGAACGAAAAACGTTTGGTAAGGCATATCCAAAGACTTGAGTCTTGTGGATTTGCACCAGATAAACAGGCTGTTCGATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAGTGTGCAGGGCGCGATTGGTTAAATTCTTTTCTGGAAAGGAATAGAGAACTAAGCATTAGACAAGCCGAGGGATTGTCTCTAGCACGGGGTCAAGGCATGTCAAGAGATGAAGTGAACAGATTTTTTGACCTGCTGTTCGAAATCTATACGAAATATGATCTCTTCGATAAGCCTGGAAGCATTTACAATATGGACGAATCTGGTCTACAGCTAAATAACAAGCCAGGAAAAGTACTTGCAACCAAAGGGGCCAAAGACGTGCATGTCGTCACATCAGCTGAAAGAGGAGAAAATGTTACCGTGATTAGTAGAGGGGATGAGATGGTTCTGGACCTAGATCCCCTTACCGACATGTTACCGACCGAGGGTTCGCATCCGTGCTACTCACCTACAGTGGGTAAGTTACCCCACTGTTACCGACCGATGGTTCTATTTACCGACAGTGGCCCCGGTGCCCCCTGTTACCGGCCGATGGTTCGCTCTATTTACCGACAGATAGCATCCCTATTATAG
Protein Sequence: MPRKYTKKNTEAASKRGQWTEENLREAINRLNAGEIGVNEASEYYSIPSRTLRRRRSSGILEKLPLGPQGSLGPENEKRLVRHIQRLESCGFAPDKQAVRYXXXXXXXXXXXXXXXXXXXQCAGRDWLNSFLERNRELSIRQAEGLSLARGQGMSRDEVNRFFDLLFEIYTKYDLFDKPGSIYNMDESGLQLNNKPGKVLATKGAKDVHVVTSAERGENVTVISRGDEMVLDLDPLTDMLPTEGSHPCYSPTVGKLPHCYRPMVLFTDSGPGAPCYRPMVRSIYRQIASLL

Sequence clustering based on sequence similarity using MMseqs2