Eruf008443.1
Basic Information
- Insect
- Eutolmus rufibarbis
- Gene Symbol
- -
- Assembly
- GCA_963920795.1
- Location
- OY987205.1:4708732-4715126[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.19 32 6.4 0.7 1 21 221 241 221 242 0.95 2 11 0.00025 0.041 15.5 0.7 1 23 258 280 258 280 0.98 3 11 0.00024 0.039 15.5 1.1 2 23 294 315 294 315 0.98 4 11 1.1 1.8e+02 4.0 1.6 1 23 344 365 344 365 0.78 5 11 3.4e-06 0.00055 21.4 0.5 2 23 372 393 371 393 0.96 6 11 3.8e-05 0.0063 18.0 1.3 1 23 413 435 413 435 0.98 7 11 2.1e-07 3.5e-05 25.1 3.1 1 23 441 463 441 463 0.99 8 11 0.0018 0.3 12.7 4.8 1 23 469 491 469 491 0.98 9 11 8.1e-06 0.0013 20.2 0.2 1 23 497 519 497 519 0.98 10 11 6.5e-06 0.0011 20.5 0.1 1 23 523 545 523 545 0.98 11 11 0.0081 1.3 10.7 0.1 1 23 554 577 554 577 0.92
Sequence Information
- Coding Sequence
- ATGCCATTTAATGGTTGCAGCGCCTCTGATGaaGTTCCAGATACAGACCTCGAGGATGAAATTCCAGCTAACAGAATAATAAGTATCAGCTCTAATGATATGCTTCAAAATGAGAGCTTCTTTGCTGAAAGTAACAATTTCgttgaaataattgaagaGGATGGAATCGAAGAAGTTGTTGAATATATCGAATATAGCGACGATGAGAAAAATATGGTTGAGGAGTGTCCTTCAGATGAGCAAATTAATAGTACGGAGGATGGCTATATTGACGAAAGAgatgtaattattaaaatggagCCAGTCGATGCCGAAGAAGAGTTACCGAATCAAAATGAAGCTACGGAGCTATATCATTGCAGTTCTTGCGATACGAATTTTCATTCAGTAGTTGATCACATTAATGAATTTCACAAAGATCAATCAGTGCTTGTTGATACTGGTGATAAGGACTCATCGACGAGCATTGAAACTACTACTATTAAATCCGAGGAATCcaatgttttagaaaatactcCTTATACACATATGTTTGAAGAttcaaaaagcaaacaaattgaaacGATAAGTGAGGAAAAATGCTTTGATTCGAGTGGAAGGCCTTATATGAGAAAGaaattgcgTGTATTCGACGTTGGCTTGCCTAATATATCTGAAACTCATAAGTGCGAGAACTGTTTGGGAACTTACAATACAATTGTAGATTTGGAAAAGCATATTTGTGAgATAAATCCAGTTAAAGAACTTAAATATGGTAGCGAAGCCAAAGTGTACGCCTGTCCCGAATGTGACACTCTTTTTCAAACTCATCGTTCCTTAAGTGCTCATTTAAAAGTCCATAAAAATGAGAGTAAAGCGAATACTCCCGAATCGGAAGCACGATGTGATGTTTGTAATACGATTTTTCCAACGATGAAAAGCttaaaATTGCACCGGCGTATGCACGATCCAATTAAATCGAAAGCTATAGAAGAAGCTGTGGGGTACGAACTCAAATCCGTTTCAAGGGACGGAGCTCCAAAAGAGACATTCTTTTGTGAACTTTGCAATAAAAGCTATGACAAAATGTTTCAGGAAGTTCACAAAAAGGCACATAAATCTGGGCCAAAACTTATTTGtcaaatatgcaataaaaaattttctagtaAAGTTAATCTAGGGATGCATATGAAAATCCATAAGGAACAAACTAAACCAAAACCGACTAAAGCGGAAGCTTTTGGTATAACTCTGCCGTACGAGTGCTCTTACTGTGGAAGACAATTTGCTAGACCTCATGAAAAAGTTAAACATGAAAGAATTCATACAGGCGAAAAACCttataaatgtgaaatttgCGGTAAATCTTTTCGGGTATCCTATTGTTTAACACTTCATCTAAGAACACATACTGGAGCACGTCCTTATGTTTGTGCACATTGTAACAAAAggTTTAAGGCATACTCGGTGTACAATCATCATTTAATGACACACTCGGAGGATAGACCCTACAAGTGTCCTTACTGTCCAAAGGCTTTTAAAACTGCAGTTCAATTGGGAGGTCATAAAAATAGCCACACAAAGCCCTTTAGTTGCCCGGAGTGCAACAGACCGTTTGCATCTTTATATGCCGTTAAAGCGCATATGGAAACGCATAAAAAAGGAAGCACAAATTTGAAACATCGATGCGGTATTTGTGGTGCTATATATGCCAGAATTTTTGCCCTACGGTTGCATATGGGGGAGCAGCATCAGACTAGTTTGAACGAAGATGCTGAACCCTCTGATGTGGTCATTTCGGATGGGGCTATTTTAGAGAGTGAAAATAGAACATCTACACAGTCAATTATACCAGATAATGAAGATGAGATAACTGTAGGTGATTTGGAACACTTTCAAACGGAGGAAGTTGTAACAGATTGGCTGAAATAA
- Protein Sequence
- MPFNGCSASDEVPDTDLEDEIPANRIISISSNDMLQNESFFAESNNFVEIIEEDGIEEVVEYIEYSDDEKNMVEECPSDEQINSTEDGYIDERDVIIKMEPVDAEEELPNQNEATELYHCSSCDTNFHSVVDHINEFHKDQSVLVDTGDKDSSTSIETTTIKSEESNVLENTPYTHMFEDSKSKQIETISEEKCFDSSGRPYMRKKLRVFDVGLPNISETHKCENCLGTYNTIVDLEKHICEINPVKELKYGSEAKVYACPECDTLFQTHRSLSAHLKVHKNESKANTPESEARCDVCNTIFPTMKSLKLHRRMHDPIKSKAIEEAVGYELKSVSRDGAPKETFFCELCNKSYDKMFQEVHKKAHKSGPKLICQICNKKFSSKVNLGMHMKIHKEQTKPKPTKAEAFGITLPYECSYCGRQFARPHEKVKHERIHTGEKPYKCEICGKSFRVSYCLTLHLRTHTGARPYVCAHCNKRFKAYSVYNHHLMTHSEDRPYKCPYCPKAFKTAVQLGGHKNSHTKPFSCPECNRPFASLYAVKAHMETHKKGSTNLKHRCGICGAIYARIFALRLHMGEQHQTSLNEDAEPSDVVISDGAILESENRTSTQSIIPDNEDEITVGDLEHFQTEEVVTDWLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00936766;
- 90% Identity
- iTF_00937509;
- 80% Identity
- -