Eruf006847.1
Basic Information
- Insect
- Eutolmus rufibarbis
- Gene Symbol
- -
- Assembly
- GCA_963920795.1
- Location
- OY987204.1:58692372-58693925[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00034 0.056 15.0 2.8 1 23 185 207 185 207 0.96 2 9 8e-08 1.3e-05 26.5 1.9 2 23 213 234 212 234 0.97 3 9 0.00045 0.075 14.7 0.1 2 23 241 262 240 262 0.96 4 9 0.00061 0.1 14.2 0.3 1 23 306 329 306 329 0.95 5 9 1.4e-06 0.00023 22.6 3.8 1 23 343 365 343 365 0.96 6 9 6.7e-06 0.0011 20.4 1.2 1 23 371 393 371 393 0.97 7 9 5.6e-06 0.00092 20.7 1.6 1 23 399 421 399 421 0.97 8 9 1.5e-06 0.00025 22.5 2.3 1 23 427 449 427 449 0.97 9 9 3.4e-05 0.0056 18.2 1.2 1 23 455 478 455 478 0.95
Sequence Information
- Coding Sequence
- ATGGAATATATACAAGGATGCTGCAGGATCTGTTTAGCTAACTACTTCAAGGGGCAGTCGTTATTTATTACCTACAATAATGAGTACTTGCCAGAAGTCATAGCAAACATCTCTGGGATTCATGTGAGGGAGGACGATGGCCTGCCATCCACAGTTTGCGTCGATTGCGCTGATCTTCTGCTGCAAGCACAGAACATCAAGAGAACGTGCCTGTCCTCGGACGTTTTGCTGCGATCACAACTCAACGCAATTTTCAGCGAACAAGAGCAACCTGTTTGCTCTGAACTGAGAAATAAAGACCTGGACGACAGCATTATTTGGAGCCAATTGAACGAAAACATTTTCGACAGCCTCGTTCAGGCGGAAAATGATGAGAATCTCAGGCAGGAGCTCGATAAGTATTTTGAGACAAATTCCACCAAGGAATCCAGTCAGCACGTAGACAAGCAACTTGAACAGTTTTCAGACGGCGACCAGCTGAGCGAGAAGCTCGTTAAAGAAGACTGCGACAGTGCAAAAGGAGACGAAGAAATCGATCTTCCCCCGCAATCTTATCTTTGCAGTTTATGCTCCAAAAAGTTTGTAAACAAGTTAGCCTTCAGGCGACACCAAAAGTATCACTCGCAAGACAAGACAAAATGTCCTATCTGTCCACGGGAATTCTCCCACAAATCGAACCTTAAGAGGCATCTCTCAGTGCACCGAGAAGACTGCGAACTGGTCTGCGACCAATGCGGGGATGTCTTCAGCAATTCTAAAGAACTCTATGAGCATCTTAAGGGGCACAACAGGTCCTGCGACGAGGACAGGGATGAATATGTCCTAGATTGCGGACTGTGCGCGAATAAAACGACTTCTCTGGCTAGCCACCTGGTCCATATGAGGGAAAAGCACAGCGTGGAAGAATCGAAGCCATTCAAATGCGCCCTTTGCGGAATGAAGTTCGCATCGAAACAAGGGATGTATCGGCATATCGACAATATCCACGAGAACAATCGTCGCAATTTAAGAAATCGCGACAAAAATTTCCTCTGTAACACCTGCGGTAAGAAGTTTTACACGAACTTCCACTTGGAAGTGCACATGCGATCGCACACTGGCGAACGCCCCTTCAAGTGCCAGGTCTGCGAGAAATCTTTCTCCCAGTTATCGGGGCTGAAGATGCACACCTTCATCCACACCGGTGAAAAGCCCTTCGCATGCAAGATTTGTGGAAAGAGGTTCAACCAGTACGGCCACGTTCGGGAGCACCTCCTGACCCACTCCGACGAACGGCCCCACGTCTGCAAGGTATGCAACCACTCGTTCAGGGTTAAGGGAAATTTGACTGCACACATGATGATCCACATGGGTAAGAAGCCCTTTTCCTGTAAGAACTGCGGAAAAGGGTTCATGCAGCGGGGTAAACTGAAAGCCCATACTGATAAATCTCATGCAGGATCTGCAAAAATTTCAGAGGACCATGGATTGAGGTTGGTGGGGAATTCACGtcaacagaaataa
- Protein Sequence
- MEYIQGCCRICLANYFKGQSLFITYNNEYLPEVIANISGIHVREDDGLPSTVCVDCADLLLQAQNIKRTCLSSDVLLRSQLNAIFSEQEQPVCSELRNKDLDDSIIWSQLNENIFDSLVQAENDENLRQELDKYFETNSTKESSQHVDKQLEQFSDGDQLSEKLVKEDCDSAKGDEEIDLPPQSYLCSLCSKKFVNKLAFRRHQKYHSQDKTKCPICPREFSHKSNLKRHLSVHREDCELVCDQCGDVFSNSKELYEHLKGHNRSCDEDRDEYVLDCGLCANKTTSLASHLVHMREKHSVEESKPFKCALCGMKFASKQGMYRHIDNIHENNRRNLRNRDKNFLCNTCGKKFYTNFHLEVHMRSHTGERPFKCQVCEKSFSQLSGLKMHTFIHTGEKPFACKICGKRFNQYGHVREHLLTHSDERPHVCKVCNHSFRVKGNLTAHMMIHMGKKPFSCKNCGKGFMQRGKLKAHTDKSHAGSAKISEDHGLRLVGNSRQQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01461356;
- 90% Identity
- iTF_00937498;
- 80% Identity
- -