Ehis041125.1
Basic Information
- Insect
- Eustalomyia histrio
- Gene Symbol
- -
- Assembly
- GCA_949748255.1
- Location
- OX456527.1:47588894-47597886[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00065 0.069 15.1 5.0 2 23 371 393 370 393 0.93 2 10 2 2.1e+02 4.1 1.4 2 23 405 427 404 427 0.94 3 10 0.15 15 7.7 2.9 1 23 434 457 434 457 0.93 4 10 3.3e-05 0.0035 19.2 0.5 1 23 463 485 463 485 0.97 5 10 0.00018 0.019 16.8 3.2 1 23 491 514 491 514 0.98 6 10 0.0057 0.6 12.1 3.7 2 23 548 570 547 570 0.92 7 10 0.45 47 6.2 1.0 3 23 583 604 581 604 0.94 8 10 0.035 3.7 9.6 1.5 1 23 611 634 611 634 0.96 9 10 7.9e-05 0.0083 18.0 0.7 1 23 640 662 640 662 0.98 10 10 8.2e-06 0.00086 21.1 1.9 1 23 668 691 668 691 0.98
Sequence Information
- Coding Sequence
- atggATTCCAATACTCAAAAATATCGAATAGCTTGGGAAAAAGATCCTCTTTTCAAGAAATGGCTACGCCCAAccaaagatgttttaaaagCATCTTGTTTATATTGTAAAACAGAAATTGGAGCACGATATGCTGATTTAATTCGTCATACAAAAacctttaaacataaaaaagctATACAGCCTTTTAATGGACTACAAGTTTCACAGCCACAATTATCATTTGCCTCAAAAGatgcaaacgaaaaacaaaaagccCAGGGTAGACTTTCTCTATATGTGGCCGTTCATTCATCATTTCTGGCTGTAAATCATTTGTCTGCAGTTTGCAACACAGAATTTTGTGACAATAAACCCTCAAATTTTTCATTGTATCGTACAAAATGTgctaatataattaataatgttttgGGCCCACATTTTATAGAAGACTTATTGAAGGATATAACAAATGTACACTTCAGTTTAATTTTGGATGAAGGGACCGATATTTCGGTGGAGAAGCTTTTGGGAGTAGTCATCCGATATTACAGTTcttcaaaaaaacaatttgtcacCACTTTTCTTGGCTTAATAGATTTGGTGGAAGGGAATGCTGAAGAAGACTTATTGAAGGATATAACAAATGTACACTTCAGTTTAATTTTGGATGAAGGGACCGATATTTCGGTGGAGAAACTTTTGGGAGTAGTCATCCGATATTACAGTTcttcaaaaaaacaatttgtcacCACTTTTCTTGGCTTAATAGATTTGGTGGAAGGGAATGCTGATGCCTGGCAGTTGGCTGTGTCCTCTGCTACAGACAAGCACTTTCCGAATAATTTAGAATTCTTAATTAAAGAAACACATAATTGGTTTGCCCACTCAACCGTACGACAAAaagtttatgttaaaatttacaaattaattaatggTGTCGAAATGGACCCACATAAAGTGTCGCAGGTGTCAAATACCAGATGGCTTTCCATTGAAAAGGGTGTTAAGCGAATATTAAATATGTGGCTGGAACTGAAAACCTATTTTAATGTCGTTAATGATAGAGGatttcCCACCAAACGTAAACTTAAATCTCACCTACCCGCCCACCTTGATGGATTCAATTGTATGTGTGACATATGCGGTAAtacatttagaaataaatttactcTTAAAAAACATATCGAACATCAACATTCAGATGGTCCACGCCGTGATAAAGAGCCACAACAATGTCCGATATGTTGCAAATTGTTACGGGGCTTTAAAGGCCTAAGAGctcatatgaaaaatttacacGAAGATACAGACCAAGAGCATCGTTGTAATATCTGCAATCATTTATCAACAACGGCCAAAGGCCTGAGAGTACATCAGATATTTCGTCATGAAAAGGAAAGAAAACATAAATGTTCATTATGTGAAAAGGCTTTTAAAAGGCCATTGGAATTAAGAGAGCATATTGCCGTTCACACTGGAGaatctttatataaatgtgCTGAATGTGCAGCTACATTTAAATCAAACTCAAATTATTATCATCACATTAGACGTTTCCATAGGGAGAAACCCACAAAAGATTTAATGATTAAAATGGCatatGCCACCAAAACTATACTTGATACTCATGTACATCAACATAGTGACAGATATAAATGTATCTGTGATATTTGCGGTAAagcttttaaaagtaaatttatactTAGAAAACATCATTATGTACAACATACGGAAAATCCAAATGTAGATAATAAACCAATCATATGTCAAATATGTTCTAAATTGGTTCATGGCCGCAGAGGTCTAAAAActcatatgaaaaatttacacGATAATACCGAACGAGAACATCGTTGTGAGGTATGCAATCATGTATCAATATCGGCCAGAGGACTTCAGACACATGTGTTACGTCGTCATAAACTGGAAAAGACACATAAATGTGCTATGTGTGATAAGgcttttaaaaacactttggCTTTAAGAGAGCATATTGCTACGCATACTGGCGAACCTTTATATAAGTGTGCAGAATGTGGTGcaaaattcaaatcaaattcaaatttttatcaacACATCAAACGTTATCATAAAGAGAAACCCAAAAGAGAATTATTGATCAAAATGGcatga
- Protein Sequence
- MDSNTQKYRIAWEKDPLFKKWLRPTKDVLKASCLYCKTEIGARYADLIRHTKTFKHKKAIQPFNGLQVSQPQLSFASKDANEKQKAQGRLSLYVAVHSSFLAVNHLSAVCNTEFCDNKPSNFSLYRTKCANIINNVLGPHFIEDLLKDITNVHFSLILDEGTDISVEKLLGVVIRYYSSSKKQFVTTFLGLIDLVEGNAEEDLLKDITNVHFSLILDEGTDISVEKLLGVVIRYYSSSKKQFVTTFLGLIDLVEGNADAWQLAVSSATDKHFPNNLEFLIKETHNWFAHSTVRQKVYVKIYKLINGVEMDPHKVSQVSNTRWLSIEKGVKRILNMWLELKTYFNVVNDRGFPTKRKLKSHLPAHLDGFNCMCDICGNTFRNKFTLKKHIEHQHSDGPRRDKEPQQCPICCKLLRGFKGLRAHMKNLHEDTDQEHRCNICNHLSTTAKGLRVHQIFRHEKERKHKCSLCEKAFKRPLELREHIAVHTGESLYKCAECAATFKSNSNYYHHIRRFHREKPTKDLMIKMAYATKTILDTHVHQHSDRYKCICDICGKAFKSKFILRKHHYVQHTENPNVDNKPIICQICSKLVHGRRGLKTHMKNLHDNTEREHRCEVCNHVSISARGLQTHVLRRHKLEKTHKCAMCDKAFKNTLALREHIATHTGEPLYKCAECGAKFKSNSNFYQHIKRYHKEKPKRELLIKMA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -