Ehis027463.1
Basic Information
- Insect
- Eustalomyia histrio
- Gene Symbol
- -
- Assembly
- GCA_949748255.1
- Location
- OX456525.1:85182465-85187837[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 9.5e-06 0.001 20.8 0.9 1 23 175 197 175 197 0.99 2 15 0.24 26 7.0 0.8 1 23 203 226 203 226 0.93 3 15 0.0002 0.021 16.7 0.9 1 19 305 323 305 325 0.96 4 15 0.0013 0.14 14.1 2.5 1 23 330 353 330 353 0.97 5 15 5.2e-05 0.0055 18.5 2.3 1 23 471 493 471 493 0.98 6 15 3.3 3.4e+02 3.4 1.5 1 23 499 522 499 522 0.93 7 15 1.5e-05 0.0015 20.3 1.6 1 23 551 573 551 573 0.98 8 15 0.00014 0.014 17.2 0.6 2 23 580 602 579 602 0.97 9 15 0.023 2.5 10.2 1.9 2 23 662 684 661 684 0.92 10 15 4e-06 0.00042 22.0 1.7 1 23 717 739 717 739 0.99 11 15 0.58 60 5.8 0.4 1 23 748 770 748 770 0.92 12 15 0.017 1.8 10.6 5.0 1 19 776 794 776 803 0.92 13 15 0.031 3.3 9.8 0.1 2 23 806 828 805 828 0.87 14 15 0.015 1.6 10.8 2.2 2 23 836 858 835 858 0.95 15 15 0.091 9.5 8.3 0.4 1 23 871 894 871 894 0.96
Sequence Information
- Coding Sequence
- atgtGTCCAACAGCAGTGTTATGTAGGTTATGTCTTTGTTCTAGTAGTAAATTTCAAACATTGGTTGATAAAACTGGagagtataatgaaatttttgacaTCGTTTCCAGTTATTTCGATGCAatgCTATTGACAAGGGAAATATGTATGGATTGctggaaaaaaatacatgtatttTATGAATATCAACAATCGGTTCTTAGGGCTCAGGCTGCTCTTAATGATGTTGTAAAAATTGAATCCTCACCAACTGTTTTGGAAATGGTACAAATAGATAAGGatataaatgaaaaactaGATGTGGACATTACCAAAAAAGAAGACTTTAAAGACTATAATCCATTCGGTTCTGATGATGAAGTTTTATCACCtgaatattccaacaaaaaaatacgcGAATTTGAAGAACAAGAAATAAAAGAGagaaaaaatagtattaaaaaaattaacgcaTCATACAAAAATTCCGAAGAAGCTAATAATTTAGGTACTCATGATGATTCTACTCAAGATGAACACAGATTTAAATGTTCCATATGTAATAAAGATTATAAATATGCTGTAACATTGCGTAGACATATAGCCACTCATACTATACGGGATATTTATCAGTGTCCATATTGTGCGACTAAGTTTCAAGGAAAGAATAATATTCCTCAGCATGTTAGACGATTTCACCCCAAAGAAATTccgaattttaataataaaaaacttaaaagtttaaattcaaCTGTGTCAAAAGATAAAATGTATAACAAAGGAAGTACCGAATGTCAAATTGTAGCTGAAGCTCCAGTAACTTGTTTTGAACAGTTAAATTCTACTGAAAAAAATTCCCTTTCTGCTTCACTTAAAGAAGAAACAATTGAACCTGATGACAATGATGGTGATGCTACTaacaataaaagtaaatttaaatgttcCAAATGCGATAAAGTATTTTCAAATACCTTCGACTTACGTTATCATGCAGCTGATAAGTGTATTTATCAGTGTCCACATTGTTCAGTGAAATACAAATTGCTTCGAACCCTTCGTCGTCATATTAAACTATTGCATCCTGACAAATATGTCAAGCATAACAGAAAGGTAAGATTTACTTCTTTTCAAGTAAAACGTTTATAttctaataaatatgcaaagttaaacaataagaaattaaaaaatttaaaattggattcaaataaaaatttatccgtgATAAAAGATGAAATCTCTAACGAAGAAAATGCTTACGTTCAACCTGTTGAAGAGTCTTCTGAAATTATTATTGAACAATTAAATGATAATATTgatgaaaacttatttaatgctgCATCTGAAAAAGAAACTATTGATGCTGATTATCACGTTACCCTTAAAGAGAAACCTACTGCGCCTGATCTTGATGTTAATacttatgaaaataaatataaatgtgaaaaatgtgaaaaaagttttaaaaatgttcaagcATTGAGTAGACATAAAACTACTCACACTGTACGACCTATTTATAAGTGTCCATGCTGTCCAACTAAATTTCGAGCAAAAGCTAGTATTCCTCGTCATGTTAAACGTTTGCATCCCAGTAAATTTCCGAACTTTAACATCAGGGAACTTAAAAGCATAAATTCAACCGTGTTAAATAGTACTGAAGGTAAACGTAaatataaatgtaacaaatgtgATAGAGAATATTCGAGCCGCGACAACTTTCGTGCTCATACCGCTTCACATAAAAATGAGTCTCTTGTTCGTTGTCCCTATTGTCGATCAAAATTTACACTACCTGTAACCCTTCGTCGCCATATTAGAACCTTACACCCCGAGAAATATGTTGAGGCTAACCGCAATGTTCCAGTGGATTTGAACTCATTAGGGCGGCATTTAACAATTTTGGATCCCACgataacaaatgtaaaaaacgaAGGTACTATTAATGAGGGCTTGCCCAATTATAATGATTATGATGCCTTTATAGCTAAGTGGAAACCAGAACTTGAATGTGATATATGCAAAAATACATTCAAAAGTTTCGCGAAGTTACGTCAACATTTCAAGGATAAACATCCACGTGATAAATGTCATGTAGTGTGTTGcgagcaaaaaattttatttcgcaTCAGATTGGTCGATCACATACGACTGCATCTGGATCCACATTCTTTCAAGTGTAACATTTGTGGGAAATGTTCAGATAACAGTCAATTACTATTAGCTCATATGCGATCACATCCTAATGGAAATCGTGGAAAGCAATTCCAATGTGAAGTttgtcaaatatattttcaaagcaaaattCGTCTATTATTGCACTCTGATATTcacaacacagaaaaaaaccatttttgtaAGGTTTGCAATAAAGGATTTTCTACTGCATTTCTTCTTAAAAAACACGATCTTAAAGAACATGTCCATAAACATGAATGGCCTTGTAAGATATGTGGCGCTCGGTTTAGAACACGTGTAATTCTTAGAAATCATAAAGCTGCCAATCATATTGTTAATAAGACTCCTTGCATTTgcactgtttgtggtgaaaaatttttaagtaaaagatcCTTAAAAATCCACAAAAGAAATGCTCATGGTAAAAGACGTTTACGTACTAAAGATACTGCTAAATATCAGTGTCCACATTGTCCTTTGACACTGATGCTAAAAAGGAGTGTTCCTCGCCATATTCGAACTGCACATCCCAACATAAAGGATTAA
- Protein Sequence
- MCPTAVLCRLCLCSSSKFQTLVDKTGEYNEIFDIVSSYFDAMLLTREICMDCWKKIHVFYEYQQSVLRAQAALNDVVKIESSPTVLEMVQIDKDINEKLDVDITKKEDFKDYNPFGSDDEVLSPEYSNKKIREFEEQEIKERKNSIKKINASYKNSEEANNLGTHDDSTQDEHRFKCSICNKDYKYAVTLRRHIATHTIRDIYQCPYCATKFQGKNNIPQHVRRFHPKEIPNFNNKKLKSLNSTVSKDKMYNKGSTECQIVAEAPVTCFEQLNSTEKNSLSASLKEETIEPDDNDGDATNNKSKFKCSKCDKVFSNTFDLRYHAADKCIYQCPHCSVKYKLLRTLRRHIKLLHPDKYVKHNRKVRFTSFQVKRLYSNKYAKLNNKKLKNLKLDSNKNLSVIKDEISNEENAYVQPVEESSEIIIEQLNDNIDENLFNAASEKETIDADYHVTLKEKPTAPDLDVNTYENKYKCEKCEKSFKNVQALSRHKTTHTVRPIYKCPCCPTKFRAKASIPRHVKRLHPSKFPNFNIRELKSINSTVLNSTEGKRKYKCNKCDREYSSRDNFRAHTASHKNESLVRCPYCRSKFTLPVTLRRHIRTLHPEKYVEANRNVPVDLNSLGRHLTILDPTITNVKNEGTINEGLPNYNDYDAFIAKWKPELECDICKNTFKSFAKLRQHFKDKHPRDKCHVVCCEQKILFRIRLVDHIRLHLDPHSFKCNICGKCSDNSQLLLAHMRSHPNGNRGKQFQCEVCQIYFQSKIRLLLHSDIHNTEKNHFCKVCNKGFSTAFLLKKHDLKEHVHKHEWPCKICGARFRTRVILRNHKAANHIVNKTPCICTVCGEKFLSKRSLKIHKRNAHGKRRLRTKDTAKYQCPHCPLTLMLKRSVPRHIRTAHPNIKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -