Ehis041845.1
Basic Information
- Insect
- Eustalomyia histrio
- Gene Symbol
- -
- Assembly
- GCA_949748255.1
- Location
- OX456527.1:65405361-65407870[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0034 0.35 12.8 0.6 6 23 279 296 279 296 0.98 2 11 0.0026 0.27 13.2 0.7 1 23 302 325 302 325 0.98 3 11 0.00077 0.081 14.8 0.2 2 23 334 355 334 355 0.95 4 11 0.0004 0.042 15.7 5.5 1 23 437 460 437 460 0.98 5 11 0.00022 0.023 16.6 2.3 1 23 468 490 468 490 0.95 6 11 3.4e-05 0.0036 19.1 0.8 1 23 498 521 498 521 0.95 7 11 0.00011 0.012 17.5 0.7 2 23 528 549 527 549 0.96 8 11 0.00016 0.017 17.0 2.1 2 23 558 579 557 580 0.94 9 11 0.00088 0.093 14.7 1.7 1 23 587 610 587 610 0.95 10 11 1.4e-05 0.0014 20.4 0.5 2 23 617 638 616 638 0.97 11 11 0.0073 0.77 11.8 6.7 1 23 644 667 644 667 0.96
Sequence Information
- Coding Sequence
- atggaTAGTTGTTTAATGTGCTTCAAGATAAATAAATGCTTTGAGGATTGTATCAGAGTTAATTCCACACAGTGgcttgaattaaatatacaaaatctaatagaaaaacatttatgGCCACTGGAAACAATAAACCCTTCCGCAATATTATGTACAATTTGCTGGAAAGAGTTGTatgattttcataaattctaCAGACGCATAGAAGATGTTCATATAGATATTGGTAATACAATGAAAACTGAGATTGAACCAGAAATTCAAATTGACGTTTTGgaatttaaagttaattgtAAGGATTACAAAGATGACAACGATCCACTATATAAAAGTCCTCTAATCGAatgtaaaaatgaaattattatggAACAGTCAATTCCAATAAAAGAAGCAATTGATAatgaaaaaactattattaaaaaagaaccagATGATGAGACTTGCGAAGGTGATACCACAAATTTACAAAGAAGTACGAGAAGAggcatttgtaaaaaaatagttaataaaaccaaaagaaaaagaactagaacaaaagaattattttcaaaaaatgtttcaccAAAAGAAGTAAACGAACAAGATATTGAGCAACAAATTACAATTAATAGTAATGAAgaactttttaaagaatattcatCAATAAATGTAGATGAtagcaaaaaaccaaaaaaatcagcttacacattttttgaaactAATACAGAAAAAGATGAATTCTTGacgaaaaactataaaataactTGTATATTGTGTGAACAACCAATGGACACTTTTTCCGTTTTATGTAAACACTTTCAATCGGAACATAATGAACCGGGTTATGTTATATGTtgtaataagaaattttctacACGCAGTCTACTTATAGATCATATATTTAGTCATTTAAATCCAGAtcattttaaatgtaatcaaTGTGGTTTAATATTGTCCCATCGTCAAGGTTtggatattcatattaaaaggatacataataaaaatattgattggcgtgaatattgtaatatttgtggTGAAGGTTTTCCCGATATCCATGAATTGAAAGCTCacaaattattacataatttacAAGAAAATCCATCGTATAAACTACCAGAAAGTAATAAAGAAAAAGATGACTTTCTAGCAAAACACTATAAAATATCTTGCATTTTGTGTGAACAGCCAATGGAAACATTTGACATTTTgtgcaaacattttaagatgGAACATAATCAACCTGGTTATGttatttgttgtaataaaaaatttggcacACGCAGTATTTTGGTGGATCATGTACATTGTCATTTAAATCCCGATCACTTTAAATGTAATCACTGTGGTAAAATAATGTCGGATCGTCAATGTTTGGAGAGACACATTCGAAAGCGGCATGTCGGCAATGTGGAAAAAAATCACTGCTGTGATGTGTGTGGAAAACGTTTTGCTGATAAAACTGGTCTGAGACTACACAAAGCAATACATCTACCGGAAGAAGAGAAGAATTTTAATTGTACAGAATGTggtaaaaaCTTTGCACACGAAGAAGGTTTATCGCAACATATACGTTTTatacatttgaagaaaaatgttaaagtctGTGATATATGTGGCAAAACTATTAGATATTCGAATCTATTTAAACGTCACATGATGGAACATGAAGGTAAACCACTACCCACTGTCAGCTGCGAAATATGTGGACGACGTCTTTCcgataaaataagtttaaaacgTCACAAGCAGCGTCATCATTCAGGTGAAAAACGTGAACATACTTGTAATATATGTTTCAAAGTTGTTACATCAATATATTCATTACGGAAGCATATACTTTTAAAACACGAAAGGGGTTATGATCAAAAATGTACTATATgcgaaaaaacatttaatagacCGCAGGCATTAAGGgatcaTTTGGCTAGACATGCCGGTACTGCTTTACATTCGTGTACTTGGTGCAGTAAAtctttttattcaaatggcCATATGCATGCTCATCGTAAAAAGGCTCATCCTAAGGAATGGGAAGAGGCGCaaagagaaaaattttcagGAAATTTACCACCGAATTATAAGCCAcctgaaataaattaa
- Protein Sequence
- MDSCLMCFKINKCFEDCIRVNSTQWLELNIQNLIEKHLWPLETINPSAILCTICWKELYDFHKFYRRIEDVHIDIGNTMKTEIEPEIQIDVLEFKVNCKDYKDDNDPLYKSPLIECKNEIIMEQSIPIKEAIDNEKTIIKKEPDDETCEGDTTNLQRSTRRGICKKIVNKTKRKRTRTKELFSKNVSPKEVNEQDIEQQITINSNEELFKEYSSINVDDSKKPKKSAYTFFETNTEKDEFLTKNYKITCILCEQPMDTFSVLCKHFQSEHNEPGYVICCNKKFSTRSLLIDHIFSHLNPDHFKCNQCGLILSHRQGLDIHIKRIHNKNIDWREYCNICGEGFPDIHELKAHKLLHNLQENPSYKLPESNKEKDDFLAKHYKISCILCEQPMETFDILCKHFKMEHNQPGYVICCNKKFGTRSILVDHVHCHLNPDHFKCNHCGKIMSDRQCLERHIRKRHVGNVEKNHCCDVCGKRFADKTGLRLHKAIHLPEEEKNFNCTECGKNFAHEEGLSQHIRFIHLKKNVKVCDICGKTIRYSNLFKRHMMEHEGKPLPTVSCEICGRRLSDKISLKRHKQRHHSGEKREHTCNICFKVVTSIYSLRKHILLKHERGYDQKCTICEKTFNRPQALRDHLARHAGTALHSCTWCSKSFYSNGHMHAHRKKAHPKEWEEAQREKFSGNLPPNYKPPEIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -