Ehis041831.2
Basic Information
- Insect
- Eustalomyia histrio
- Gene Symbol
- -
- Assembly
- GCA_949748255.1
- Location
- OX456527.1:65304753-65316820[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.2 1.3e+02 4.7 1.5 6 23 375 392 375 392 0.98 2 13 1.4e-05 0.0014 20.4 0.9 1 23 398 420 398 420 0.98 3 13 0.00012 0.012 17.4 0.4 1 23 428 451 428 451 0.96 4 13 0.012 1.2 11.1 0.5 3 23 460 480 458 480 0.96 5 13 0.04 4.2 9.4 0.7 1 23 488 511 488 511 0.96 6 13 0.022 2.3 10.3 0.2 1 23 519 542 519 542 0.93 7 13 1.4e-05 0.0014 20.3 0.2 2 23 548 569 547 569 0.97 8 13 7.7e-05 0.0081 18.0 0.7 1 23 575 598 575 598 0.98 9 13 0.012 1.2 11.1 0.5 3 23 646 666 644 666 0.96 10 13 0.04 4.2 9.4 0.7 1 23 674 697 674 697 0.96 11 13 0.00036 0.038 15.9 1.9 1 23 705 728 705 728 0.93 12 13 2.3e-05 0.0024 19.7 0.2 2 23 734 755 733 755 0.97 13 13 7.7e-05 0.0081 18.0 0.7 1 23 761 784 761 784 0.98
Sequence Information
- Coding Sequence
- atggaTGGTTGTTTATTGTGTTTGGAGATAAATAAAGAATTTGGGGACTGCATAAAAGTCGATTCAGAAAAATGGCAGGAACATAATATCAAAAATCTAATAGAGAAACATTTGTGGATAATGgaatcAATATCGGACTCCTCTTGGCTTTGCCAAACCTGCTGGCAGGCACTATATGATTTTCACAAATTCTATCACCGCATAGAGGAGGCCCATATGGATTTTggcaaactaataaaaaaaatgaaaccagAATCAAGAGCACAGCATAACGATTTTGCAGATGGGGATGAGAATGATGATAAAAATGATTTGTTTGAATCACATCTTGAACCAGAGATTTTAGTAATGGAagataataaaacaattattaaagaaGAACCAAATGAAGATCTAGAAGAAGACAACTTGCCATTATCACAACGACGAAAGCGAAGCCGACATTCTAAAGAAACAAGTGATACGGAAACGGCAAAACAAGATCctttaaaaagttccaaaaagattaaaaaatcatctaaaactaagagaaaaaagaaagaaacacTTGCACAGTCAAGCAACTCGAAAACTGAAACACAACCACTTAAAGTAGATCCTGATAATATTAAGCCTCCAGAAACTCAAGAATTGAAAGAAGATCCTGATACGTTGGAAAATCTAGATATATCTAATGTGTCAATAAACTCTTCCGATTGTGATGATTTAAATACCGATTTCGATTATAAATCTGAAGAGGAGGATGATACAAAAGAgcccaaacaaaaaacaaagaaaaaaaatcgccgTAAACGAAGTACTTCCGGCTCTGATGAATTGAGTTCAGATACTTCCAATACAGACACTGATTATGAAGAGAGCAAAACCAAAAAgtcgaaaaaaacaaaacagaaacaaaagtcacgtaaaaataaatcatacaatTCAGATGATACAGATACTGAATTTAAATCTGAGGAGGACACTAATAAAGAACCCAAACGCAGTGCAGAAGAAAGAGATAAATTTTTagctgataattttaaaatgtcctgCGCACTGTGTGATGTTGTTATGCCTACGTTTCGAGctctatataaacattttcaatcGGACCACAATGAACGGGGTTATgctgtttgttgtaaaaaaaaattttacgatcGTTGTAAATTATTGGAACATGTAGAACGACATGTCGATCCagataattttaaatgcaatgaaTGTGGCAAGGAGTTATCATCACGTAAAACTTTGCAAATTCATCAACTTTCACATTTACCGgatgaagaaaaaaagtttacttgTACCAAATGTGGCAAAAATTTTGCTGAAGAAAATTTACTCACCGTTCACATATACAGGgtacatttaaaacaaacctATAAGATATTTTGCGATAAATGTGGCAAACATGTAGTCTATGGTGAAGCATTTCAACGTCATATGTTAGAACACGAGGGTAAACCAATACCTACTTTTAGGTGTGACGTTTGTGGTGTACATTTGGCCTCTAGGCAAGGTTTAGGACGACACAAAAGAGAAAAACATCCAAAGGGTGGACATAAAGATTACATCTGTAATGTATGTCTTAAAGTGTCGCCTAATATGCGAGCATTAAAAAAGCATATAAGTGATACTCATCccgcaaatattttgaaatgtacAATATGTGATAGAGGTTTTAAAAAGCCAATTGCATTAAAGGAGCATATGGCAACTCATACCGGAATCGCTTTATATACGTGTCCTTGGTGTCCAAAGACTTTCAATGCAAATGGCGGCTTACATGCTCATCGAAAAAGACAACATAGACTTGAATGGGAAGAGACTCGTCGTCAACGGCATTTAGAAAGATATAAAACTCTTGATGTCGCAGTAACAAATAATTCTAAAGATAACAATTTAGAATTAGAATTAGGAAATTTCAATGCAAGTACCTATAAGATATTTTGCGATAAATGTGGCAAACATGTAGTCTATGGTGAAGCATTTCAACGTCATATGTTAGAACACGAGGGTAAACCAATACCCACTTTTAGGTGTGACGTTTGTGGTGTACATTTGGCCTCTAGGCAAGGTTTAGGACGACACAAAAGAGAAAAACATCCAAAGGGTGGACATAAAGATTACATCTGTAATATATGTCATAAAGTGTCGCCTAATAAGCATGCTCTAAAAACGCATATAAGTGATACTCATCCCGCAAATATTTTGAAGTGCACAATATGTGATAGAGGTTTTAAAAAGGCAATAGCATTAAAGGAGCATATGGCAACTCATACCGGAATCGCTTTATATACTTGTCCTTGGTGCCCAAAGACTTTTAATGCAAATGGTGGCTTACATGCTCATCGAAAGAGACAACATAGAGTGGAATGGGAAGAGGCTCGACGACAAAGGCATTTGGAAAGATATAAAACTCTTGATGTCGCAGTAGCAAATAATCCAAACgatagtaatttttaa
- Protein Sequence
- MDGCLLCLEINKEFGDCIKVDSEKWQEHNIKNLIEKHLWIMESISDSSWLCQTCWQALYDFHKFYHRIEEAHMDFGKLIKKMKPESRAQHNDFADGDENDDKNDLFESHLEPEILVMEDNKTIIKEEPNEDLEEDNLPLSQRRKRSRHSKETSDTETAKQDPLKSSKKIKKSSKTKRKKKETLAQSSNSKTETQPLKVDPDNIKPPETQELKEDPDTLENLDISNVSINSSDCDDLNTDFDYKSEEEDDTKEPKQKTKKKNRRKRSTSGSDELSSDTSNTDTDYEESKTKKSKKTKQKQKSRKNKSYNSDDTDTEFKSEEDTNKEPKRSAEERDKFLADNFKMSCALCDVVMPTFRALYKHFQSDHNERGYAVCCKKKFYDRCKLLEHVERHVDPDNFKCNECGKELSSRKTLQIHQLSHLPDEEKKFTCTKCGKNFAEENLLTVHIYRVHLKQTYKIFCDKCGKHVVYGEAFQRHMLEHEGKPIPTFRCDVCGVHLASRQGLGRHKREKHPKGGHKDYICNVCLKVSPNMRALKKHISDTHPANILKCTICDRGFKKPIALKEHMATHTGIALYTCPWCPKTFNANGGLHAHRKRQHRLEWEETRRQRHLERYKTLDVAVTNNSKDNNLELELGNFNASTYKIFCDKCGKHVVYGEAFQRHMLEHEGKPIPTFRCDVCGVHLASRQGLGRHKREKHPKGGHKDYICNICHKVSPNKHALKTHISDTHPANILKCTICDRGFKKAIALKEHMATHTGIALYTCPWCPKTFNANGGLHAHRKRQHRVEWEEARRQRHLERYKTLDVAVANNPNDSNF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -