Ehis027938.1
Basic Information
- Insect
- Eustalomyia histrio
- Gene Symbol
- -
- Assembly
- GCA_949748255.1
- Location
- OX456525.1:98791751-98795739[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.8e-07 1.9e-05 26.3 1.6 1 23 169 191 169 191 0.98 2 15 0.00071 0.074 15.0 1.0 1 23 197 220 197 220 0.97 3 15 0.002 0.21 13.5 0.5 1 23 301 323 301 323 0.96 4 15 0.0026 0.27 13.2 0.5 1 23 329 352 329 352 0.98 5 15 3.5e-05 0.0036 19.1 0.6 1 23 439 461 439 461 0.98 6 15 0.014 1.5 10.9 0.1 2 23 468 490 467 490 0.95 7 15 0.022 2.3 10.3 2.0 2 23 550 572 549 572 0.92 8 15 2.4e-05 0.0026 19.6 2.6 1 23 605 627 605 627 0.99 9 15 6.2e-05 0.0065 18.3 3.3 1 23 633 655 633 655 0.98 10 15 0.0026 0.27 13.2 2.0 1 23 661 683 661 683 0.95 11 15 0.014 1.5 10.8 5.1 3 23 692 712 690 713 0.93 12 15 0.16 17 7.5 1.9 3 23 746 767 744 767 0.96 13 15 0.00025 0.026 16.4 0.9 1 23 774 797 774 797 0.96 14 15 9e-05 0.0095 17.8 0.6 1 23 805 827 805 827 0.97 15 15 0.006 0.63 12.0 0.5 1 23 833 856 833 856 0.97
Sequence Information
- Coding Sequence
- aTGTGTCCATCTTCAGTGTTATGTCGGTTATGTCTTTGTTTTTGCAGTGAATTTAAAGCATTAGTTGATGAATCTGGAGAGTACAATGACATTTATGTCATCGCCTCCATTTATTTCGATGCAAAGcTATTAACAACGGAAATATGCCTGGATTGTTGGCAGCATATACATGCATTCTATGAATATCAACAATCGGTAATTAAGGCGCAGTCTAATCTTAATGATGTAAAAATTGAATCTGCATCTTCTGTTTTGGAAATGGTACAAATAGATAAGGGTAATGATGATATCCTAAAAGAAGAAGAAGCCATTGAAAAGAGAACAGACTTAATTGATTATAATCCATTTGATTCTGATGATGATGGAAATTTATCGCCTGAAACTTCTAATGCGaataaaattaaagcatttggagatcaaaaaataaaagaggcaGCAGATAACATTaaacaaattgatatatataaaaatcatgatAATCTTTCTACtcatgataaatataaatttaaatgttccaTATGTGGCAAAGACTTTAAGCACGCCAGTGGATTGCGTCGTCATATAGACACTCATACTCCACGGGAAATTTATAAGTGTCCATATTGTCCGACGAAGTTTCAAGGAAAGAGTAGTCTTCCTCGTCATGTTCGGCAGTTTCATCCTAATGAAGTTccgaattttaataacaaaaatcttaagagTTTGAATTCATGTCTGCTAAAATGCGAAATTTTTAGCGAAGAATATATAGAAATTCAAAATGAGCATGATGCTTCTGAAACTATTATTGAACAATTGAATAATAGTGTTGaagaaagtttatttaatgATGCTATATGTAAAGAAGAAACAATTGAGCCTGATGACAGTGATGGTGTTGATATTAAGAGTAAACGCATTTTCAAATGTTCCAAATGCGAAAGAGAATATTCGAAAGCAAACGACTTACGTTATCATGCAGCTGTACACACTCATGAGGATATTTATAAGTGTCCCTACTGTACAACGAAATTAACATTGCCTCGAAACATTAGTcgtcatattaaaatattgcatCCTGAGAAATATAATGAGCACATAAGTAGTTTTTCATATTGTACGAAGAAACTTAAGGAAAAAAGTATTTCTCCTCGAATTAAACGTTCATATTCTAATaatgatttaaagaaaattaatagaCAATTGAAAAGACCAAAACTGGCATCAAATGTGACAAAAGAAGAAGACCAGActactgaaattatttttggccaattaaattcatttaatgaTACAACATCTAAGGAAGGAACTACTACTGAAAGTAAATGTAAATACAAATGTCTTAAATGTGATAGAGAATATTCGAAACCTACTGACCTTCGTGATCATATGGCTTCACATAAAAATGAGGCTTTAAATCAGTGTCCCTATTGTCCGGCAAAATTATCACTGCCTCGAAACGTTCGTCGTCATATTAAAGCATTACATCCAGACAAATATGTTACAAAAGTGGATGATACGAAAGTGGATTTAAACTTATTAGGGCGACATTTAACAAATTCGTATCCCACGTTAACAAATGCTGAAGCAGATGCTGTTGTTAATGAAGATTGTCCCAATTATGATGATTATGATGCCTTTATCGCTAAATGGAAACAAGTACTTGAATgtgatatttgtaaaaattcgttcaaaaattttgattttttacgcCAACATTTCAAGTTTGAACATCCACGTGATAAATGTTATGTAGTGTGttgtgaacaaaaaattttatatcgttCTAGATTAGTCGATCACATACGACTGCATCTTGATCCAAATTCTTTCAAGTGTGCAATTTGTGGAAGATGTTCAAATAATAGTCGTTTACTGAAACTTCATATGCGATCACATAGTGATGAAAAACCATTTCAATGTAATGTTTGTCATAAAAAATTCCGATTGAAAAGTAAATTATCAGTTCACATTGGTACGCATAGCTCAGAAAGAAACCATTTCTGCGAGGTATGCAACAAGGGGTTTTCCACCATACTTCTTCTTAAAAGACACAGATATGTGCATAAAGAATTGAACGTTAAACATCTTTGTGATCAATGTGGTAAACCTTGTTTTAGCGCAAATGATCTCAAAAAGCATCTCCTTCAGCATCATggcattgaaatatttaaatctaaCACTAAACATCTTTGTGATCAAGAGCATCTGCTACAGCATGATGGtattaaaatatctaaatcCGAGTGGTTTTGCGATATATGTGGCGCTCAATTGAAAACACGCTTGACTCTCAAAAGCCATAAACTAACATGTCACAATGATAATAAGACTGCTTATGTATGCAGTGAATGTGGtaaattttattcaactaaATTAGCTTTAAGTACTCACAAGTCCAagatacatagaaaaaaatgtgtacGTAATTTTCAATGTTCCATAtgtcttaaaatatttacatctaGTACATCATTACGTTCGCATGGTGCCACACATACTAAAGAGAATCACTATCAATGTCCCCATTGCCCGTTGAAATTAagacaaaaaaagaatattccTCGCCATATTCAAATTGCACATCCAACAGAATTTGGAAAGATGAATCGACGTAAAAGATCAAAAATGGATTTAAGTTTAATAGAACAAAAGATTGtactgtaa
- Protein Sequence
- MCPSSVLCRLCLCFCSEFKALVDESGEYNDIYVIASIYFDAKLLTTEICLDCWQHIHAFYEYQQSVIKAQSNLNDVKIESASSVLEMVQIDKGNDDILKEEEAIEKRTDLIDYNPFDSDDDGNLSPETSNANKIKAFGDQKIKEAADNIKQIDIYKNHDNLSTHDKYKFKCSICGKDFKHASGLRRHIDTHTPREIYKCPYCPTKFQGKSSLPRHVRQFHPNEVPNFNNKNLKSLNSCLLKCEIFSEEYIEIQNEHDASETIIEQLNNSVEESLFNDAICKEETIEPDDSDGVDIKSKRIFKCSKCEREYSKANDLRYHAAVHTHEDIYKCPYCTTKLTLPRNISRHIKILHPEKYNEHISSFSYCTKKLKEKSISPRIKRSYSNNDLKKINRQLKRPKLASNVTKEEDQTTEIIFGQLNSFNDTTSKEGTTTESKCKYKCLKCDREYSKPTDLRDHMASHKNEALNQCPYCPAKLSLPRNVRRHIKALHPDKYVTKVDDTKVDLNLLGRHLTNSYPTLTNAEADAVVNEDCPNYDDYDAFIAKWKQVLECDICKNSFKNFDFLRQHFKFEHPRDKCYVVCCEQKILYRSRLVDHIRLHLDPNSFKCAICGRCSNNSRLLKLHMRSHSDEKPFQCNVCHKKFRLKSKLSVHIGTHSSERNHFCEVCNKGFSTILLLKRHRYVHKELNVKHLCDQCGKPCFSANDLKKHLLQHHGIEIFKSNTKHLCDQEHLLQHDGIKISKSEWFCDICGAQLKTRLTLKSHKLTCHNDNKTAYVCSECGKFYSTKLALSTHKSKIHRKKCVRNFQCSICLKIFTSSTSLRSHGATHTKENHYQCPHCPLKLRQKKNIPRHIQIAHPTEFGKMNRRKRSKMDLSLIEQKIVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -