Ehis041127.1
Basic Information
- Insect
- Eustalomyia histrio
- Gene Symbol
- -
- Assembly
- GCA_949748255.1
- Location
- OX456527.1:47609831-47626153[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.2 2.3e+02 4.0 0.8 2 23 425 447 424 447 0.95 2 15 0.027 2.9 10.0 0.1 6 23 457 474 457 474 0.99 3 15 0.00023 0.024 16.5 3.1 1 23 480 502 480 502 0.98 4 15 7.8e-05 0.0082 18.0 2.3 1 23 515 538 515 538 0.92 5 15 4.1e-05 0.0043 18.9 2.0 1 23 546 569 546 569 0.98 6 15 4.2e-05 0.0044 18.8 2.1 3 23 577 598 575 598 0.92 7 15 0.037 3.8 9.6 0.4 2 23 610 632 609 632 0.96 8 15 0.0011 0.12 14.4 5.3 1 23 639 662 639 662 0.93 9 15 1.5e-05 0.0015 20.3 0.7 1 23 668 690 668 690 0.98 10 15 0.00024 0.025 16.5 1.3 1 23 696 719 696 719 0.97 11 15 0.0049 0.51 12.3 1.7 3 23 825 846 824 846 0.96 12 15 0.12 13 7.9 1.0 2 23 855 877 854 877 0.93 13 15 0.00051 0.053 15.4 2.8 1 23 884 907 884 907 0.93 14 15 6.2e-06 0.00065 21.4 1.7 1 23 913 935 913 935 0.98 15 15 2.3e-05 0.0024 19.6 0.9 1 23 941 964 941 964 0.97
Sequence Information
- Coding Sequence
- ATGGTGGTTAATAAATGTCTCCTATGCTTGGAATATCCAACAATACCGGGTCCCAAATTTCTGGAAATATTCGGTGATGaaggagaaaaattaaatattagtgcgataattaataaacatttctGCTTAAAGACAAACCGGAACAGTGAATATGTGCAAAAAGTATGTATGACTTGTTGGGAAGTAGTAAGGGATTTTCATATACTATATCAAAGAGTAGAAGAGGTCCACAAAGATTTGGAAGTTAAAACCATAGTAATAGATGATCAGGATGTTAAGTCTGAAGATTATACCTCTTCGATGGCTCAAGATCCTTTCAAAACTGATAATTGTTTGCCGGATGATAGTCTATTTGATTCAGAGGTTAAAGTTGAGGTAAATGACTTGGATTTATTGCCACAAATCGAAATATTAGAAACTGAGGCAGCTAATGAAAGACCCACAAGATCAAATCGGCGAGTACGCCAATCGACAAGAGAACAAAGTCCAAAAGTATCCGCGAAAcgtattaaaaaagaacaatcTCCTGCTAACGATAAAGATTCAAGTTTAAATGTGTTTGCGGAAAGTGAACCTTTCGCTAAAGATGTTCTTAATACTTCGGAATCCTTGGAGGATATCAATAAATCGTTATTAACTACAACTTTGGATATTTCCGATGATAAGAGTAGTAAAAGAAGAGGTAGACCACGTAAGGGGGATGCGGATAAACCGGCTAAAACTTTGCCAACGCCACGTACCAAACgttcaaaaaaacaacaacaacaagaagcgataaaagttaaaaatgaaaaagatgACAATGAAGAGGAGCCCTCCTGTTCCACAGCAGCACAAACTTCCAGCACTGCAGTGTCACAAATTAAAACTGAAACTTCTGGGGAAGAAACATCAGTATTTGATAAATTAGCCACGGGCGATAATGATCAATACGATGATGATGCTTATGCAcatgatgataatgataatgataatgctgGCCAagacgacgatgatgatgatgacgatgacgaTAATTATCAGAAAAATTCTGATGACTCCTCAGACGTAGATTTCGATTCTGATGGCTCGAATGCCTCCGATTGGGGTGAAGccaataaaaaagagaaatttgctGTCATTAAGAAAAAAGAACGTAATACtcctaagaaatataaaaaacgcGACAAACCTGCGGTGGAACCAAAACGTATGTCTCGTGAAGAAATCGAAGCACGTCAAGCCCAACAGGCCGAATTTGATAATATCATTACTAAGTTCTTTGAGAAATTACGTTGTCCCAAATGTGAACTGCTTGTGCATACATTCGGCGATATGCGTGCTCATTTTCGTACCGATCATAATGACGATCATGGTTTTGTTGAATGCTGTGGTCGTCGTTTTGCTACACGTAAATTCCTCGCAGAACATATTATGGTTCACTACAATCCCgaacattttaaatgtaaaacatGTGAAAAGGTGTGTCGCGACTCTACACAATTAGAATCACATGAACTAACACATTTACCCAATCCACCGCcctcaaaagttaaaaaaacctTCCAGTGTGAAAAATGTTCCAAGACTTTCGTATCGAAAGCTTCATTTGAACATCATATGGTGGCTAAACATGTACCGCGtgaagaatttaaatttgaatgtcCTGAATGTAAGAAAAAatGTCCAACTGAAACCAAACTAAAGGATCACATGCGTAGTGTACATGATCCACAGCGTAATGTTATATGCGATAAATGTGGCAAAACATTTAAGAGCACCTACAGTTTGAAAAAACATCACGAACTAGAACATTCGGACATACCAAAACCAGCACCAGTACCACAGCAATGTGAAATATGCGGTGCATGGCTGAGGCATTTGTCGGGTCTGAAACAACACATGAAAAATATACACGATGGCATACAAATGGAACATCGTTGTCACATATGCAATAAGGTTTCGTCAACAGCTAGAGCACTTAAAAGACATATCTATCATAATCATGAATGTATAAGAAAATTCCAATGCACCATGTGCGAGAAGGCATTTAAGAGAGCACAAGATTTAAGgGAACATACTTCCGTACACACCGGAGAGGTATTGTATACCTGTCCCAACTGTCCCATGACATTCTTTTCAAATGCCAATATGTATAAACATCGGCAACGTTTACATCGTGCCGAATGGGAGGCAGATCGTAGTAAGCCTATACCGCCCAATATTATGAAACAAGCTAAACAGGGTagtaaagttattaaaataaaacgtaGTGCTGGCGGCGCTACCACACCTTCACATTTAATAACACCAATGCCTATATCTGCATTGGCAAATCCTTCTCATTCGATATTTAATCCTCAAATAATATCTGGCCATAGAAGGCATTCTCAGTATCGGTACTATGAGAAGAAATATAATACAGGATTaTGGCCGTCAGAAGCCAAACTACGTAAACACATGTACTGCCATGATACAAATCGACAAAAAATATGTGATCAATGTGGTAAAACATTTGCCTGTAATTCTAGCATGCAGAAACATGTCAATTCTGAACATTCCGAAGTTAAACCAGAACCTCAACaatgtaaaatttgtaatacCTGGTATCGAAATTTGTCCGGTTTGAGGACACATGAGAAATTTATGCATGAAAATGTTGGTGGTGAACATCGTTGCCCAGTTTGCAATAAAGTATCTACAAATCATAGAGCACTACGaaggcatatttatttaaatcatgaatgtgaaagaaaatataaatgtcaTATGTGTGAAAAGGCATTTAAACGAGAGCAAGACTTAAGGgaACATATCTCTGTGCATACTGGCGAAGCTTTATATACTTGCCCTAATTGTCCCATGACATTTTCTTCCAGTGCTAATATGTATAAACATCGTCAGCGTTTGCATAAAGCTGAATATGCTGCACACAAACAGCAGCCAATGGCattgaatataattaaacaGGCAAAATCTGTTCCCAATACATTGCGTACCAAAAGACGTATGGCAGTAGAACAAccaacaccaccaccaccacctccaCCTTTGCTACAACATGAATTACATTTACCACCTCATGCATCATCGTCTTTGTCATTATTACAATATAGTATGAcgccaaatttaaacaaaatgcacGAATAA
- Protein Sequence
- MVVNKCLLCLEYPTIPGPKFLEIFGDEGEKLNISAIINKHFCLKTNRNSEYVQKVCMTCWEVVRDFHILYQRVEEVHKDLEVKTIVIDDQDVKSEDYTSSMAQDPFKTDNCLPDDSLFDSEVKVEVNDLDLLPQIEILETEAANERPTRSNRRVRQSTREQSPKVSAKRIKKEQSPANDKDSSLNVFAESEPFAKDVLNTSESLEDINKSLLTTTLDISDDKSSKRRGRPRKGDADKPAKTLPTPRTKRSKKQQQQEAIKVKNEKDDNEEEPSCSTAAQTSSTAVSQIKTETSGEETSVFDKLATGDNDQYDDDAYAHDDNDNDNAGQDDDDDDDDDDNYQKNSDDSSDVDFDSDGSNASDWGEANKKEKFAVIKKKERNTPKKYKKRDKPAVEPKRMSREEIEARQAQQAEFDNIITKFFEKLRCPKCELLVHTFGDMRAHFRTDHNDDHGFVECCGRRFATRKFLAEHIMVHYNPEHFKCKTCEKVCRDSTQLESHELTHLPNPPPSKVKKTFQCEKCSKTFVSKASFEHHMVAKHVPREEFKFECPECKKKCPTETKLKDHMRSVHDPQRNVICDKCGKTFKSTYSLKKHHELEHSDIPKPAPVPQQCEICGAWLRHLSGLKQHMKNIHDGIQMEHRCHICNKVSSTARALKRHIYHNHECIRKFQCTMCEKAFKRAQDLREHTSVHTGEVLYTCPNCPMTFFSNANMYKHRQRLHRAEWEADRSKPIPPNIMKQAKQGSKVIKIKRSAGGATTPSHLITPMPISALANPSHSIFNPQIISGHRRHSQYRYYEKKYNTGLWPSEAKLRKHMYCHDTNRQKICDQCGKTFACNSSMQKHVNSEHSEVKPEPQQCKICNTWYRNLSGLRTHEKFMHENVGGEHRCPVCNKVSTNHRALRRHIYLNHECERKYKCHMCEKAFKREQDLREHISVHTGEALYTCPNCPMTFSSSANMYKHRQRLHKAEYAAHKQQPMALNIIKQAKSVPNTLRTKRRMAVEQPTPPPPPPPLLQHELHLPPHASSSLSLLQYSMTPNLNKMHE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -