Ehis031362.1
Basic Information
- Insect
- Eustalomyia histrio
- Gene Symbol
- -
- Assembly
- GCA_949748255.1
- Location
- OX456525.1:141511274-141516460[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.00022 0.023 16.6 2.3 1 23 10 33 10 33 0.97 2 23 0.00088 0.093 14.7 0.0 1 23 45 67 45 67 0.97 3 23 0.00051 0.054 15.4 2.7 1 23 72 95 72 95 0.95 4 23 5.2e-05 0.0054 18.5 1.9 1 23 101 123 101 123 0.97 5 23 2.9e-05 0.003 19.3 0.8 1 23 129 151 129 151 0.99 6 23 1.5e-05 0.0016 20.2 1.2 1 23 157 179 157 179 0.96 7 23 2.2e-06 0.00023 22.9 1.1 2 23 185 206 184 206 0.98 8 23 0.00013 0.013 17.3 2.2 1 23 212 234 212 234 0.96 9 23 1.7e-05 0.0018 20.0 2.0 1 23 240 262 240 262 0.99 10 23 1.7e-06 0.00018 23.2 1.0 1 23 268 290 268 290 0.98 11 23 0.00055 0.057 15.3 0.6 1 23 296 318 296 318 0.97 12 23 1.5e-05 0.0015 20.3 2.2 2 23 376 397 375 397 0.97 13 23 0.00048 0.05 15.5 1.2 1 23 403 426 403 426 0.97 14 23 0.00047 0.049 15.5 0.0 1 23 438 460 438 460 0.97 15 23 0.0012 0.12 14.3 2.6 1 23 465 488 465 488 0.97 16 23 2.3e-05 0.0025 19.6 1.5 1 23 494 516 494 516 0.97 17 23 3.5e-06 0.00037 22.2 0.7 1 23 522 544 522 544 0.99 18 23 2.1e-05 0.0022 19.8 2.2 1 23 550 572 550 572 0.96 19 23 1.5e-06 0.00016 23.4 0.5 2 23 578 599 577 599 0.98 20 23 5.3e-05 0.0056 18.5 1.5 1 23 605 627 605 627 0.96 21 23 3.8e-05 0.004 19.0 2.7 1 23 633 655 633 655 0.98 22 23 1.7e-06 0.00018 23.2 1.0 1 23 661 683 661 683 0.98 23 23 0.00055 0.057 15.3 0.6 1 23 689 711 689 711 0.97
Sequence Information
- Coding Sequence
- ATGTCGGTACATTCAATGCAAAATGAATTTGTGTGCAATATATGCCAATATCGTTTTACCAGTGAGAGGCGATTGAAAAGCCACATGTCATCAAAACACATGGGCTTGGAGATAAGCTTAACTGGCGGTCCATATCCATGTCCCGATTGTACTCTGGTTTTTGAACAGACCAGAGCTTTAGCGGCACATAGAGTGATGCATATGAAAAGAGATTTTAAATGCGAAGTATGtggtaaaaattgcaaaacattGGCAGCTGTAACCAGACATATGCATGCGAAACATCCAAGTATCTTACCACACAAATGCCAAATGTGTGATCAAGCTTTTTCAGTCGAATCGCACTTAAACGATCATATCAATGAGCATTTAGgacaaaaaaagtataaatgtgaTATGTGTGAAAAGAGTTTTCCTAACACAACCGTTTTAAAGGAACACTTACGTTCGCATACTGGTGAGTCACCATATTTATGCCCCCACTGTGGTAAATCATTCAAAACGGCCAATGTTCTGCGTGGTCATTTACAAAGACATGGTGAGAAAAATGTTCAATGTTCTGAATGTcctatgaaattttatacaaaagaaaatttaaacaaacacaTGACCACACATTCGAAGGAAAAGCCACACGTTTGTGATGAATGTGGTTCAGCTTTTACCAGACAGTACACATTAAAGGCTCATAAATTCAAACATACAGGGCTGAGACCATTCAAATGTGAAGAATGTAATTTTagttttgttttaaaacgtcAATTGCAAAAACACCAAATCACTCATACTGGTAAAAAGCCTCATCAGTGTACATATTGTGATCGTGCTTATGCTTCTAGCGGAGATTTGGTTAAACATTTGCGAACTCATGTGGGTGAGAAAACCTATTTTTGTGACGAATGCCCGGaagcttttaaatatttgaatgatttaaaagatcataaaaatcaacattataaaaaaaaattggcgttGCAGGGAAATAGTGACCAGAAAGGAATTGATGATATAAAGGATGCTAAGAAATACAATTTATTAGATATTAAAGTTAACACATCAGCCGATAGTAAGCctaaaagaaaatatcataGAAAAAAACCGTTAAATAGAGCCAAAAGTTGCAAAACATGTTCTGAGtgtaataaaacattttcaaaaaggaaTCTATTAACAAGTCATATGTCGGTACATTCAATGGAAAATGAATTTGTGTGCAATATATGCCAATATCGTTATGCCAATGCGAGACGATTAAAAACTCATATGTCATCTAAACATATGGGCTTGGAAATAAGCTTAACTGGCGGTCCATATCCATGTCCCGATTGTCCTCTGGTATTTGAACAGACCAGAGCTTTAGCGGCACATAGAGTGATGCATATGCAAAGAGATTTTAAATGTGAAGTATGTGGTACAAATTGTAAGACATTGGCAGCGGTAACTAGACATATGCATGTCAAACATCCTGATATCTTACCACACAAATGTCAAATGTGTGATAAAGCTTTTCCAGTCGAATCACACTTAAACGATCATATCAATGAGCATTTGGGACagaaaaagtacaaatgtgATATGTGTGAAAAGAGTTTTCCTAACACAACTGCTTTAAAGGATCACTTACGTTCGCATACTGGTGAATCACCATATTTATGCTCCCACTGtggaaaatcatttaaaacggCAAATGTTCTGCGAGAACATTTACAAAGACATGGTGAGAAAAATGTCCAATGTCCTGAATGTCCTATGAAATTTTATTCCAAAGTAAATTTAACCAAACATATGACCACACATTCGAAAGTAAAGCGTCACGTTTGTGATGAATGTGGTTCAGCGTTTACCAGACAGGACTCATTAAAGGCTCATAAATTCAAACATACTGGGCTGAGACCATTCAAATGTGAGGAATGTAATTTAAGttttgtttttaaaggacattttcaaaaacatcaaattattCATGCTGGCAAAAAGCCTCACCAGTGTACATATTGTGATCGTGCTTATGCTTCTAGCGGCGATTTGGTAAAACATTTACGTACTCATGTGGGTGAGAAAACCTATTTTTGTGACGAATGCCCGgaagcttttaaatatttaaatgatttgaaagatcataaaaatcaacattataaaaaaaaattggcattacaaaaaaataatgacgATGAAGTACAACAAACAACTGTAGTTGAAGATGTAAAGCCAAATGTTGATGCAATAACAACTgattgtttgatttaa
- Protein Sequence
- MSVHSMQNEFVCNICQYRFTSERRLKSHMSSKHMGLEISLTGGPYPCPDCTLVFEQTRALAAHRVMHMKRDFKCEVCGKNCKTLAAVTRHMHAKHPSILPHKCQMCDQAFSVESHLNDHINEHLGQKKYKCDMCEKSFPNTTVLKEHLRSHTGESPYLCPHCGKSFKTANVLRGHLQRHGEKNVQCSECPMKFYTKENLNKHMTTHSKEKPHVCDECGSAFTRQYTLKAHKFKHTGLRPFKCEECNFSFVLKRQLQKHQITHTGKKPHQCTYCDRAYASSGDLVKHLRTHVGEKTYFCDECPEAFKYLNDLKDHKNQHYKKKLALQGNSDQKGIDDIKDAKKYNLLDIKVNTSADSKPKRKYHRKKPLNRAKSCKTCSECNKTFSKRNLLTSHMSVHSMENEFVCNICQYRYANARRLKTHMSSKHMGLEISLTGGPYPCPDCPLVFEQTRALAAHRVMHMQRDFKCEVCGTNCKTLAAVTRHMHVKHPDILPHKCQMCDKAFPVESHLNDHINEHLGQKKYKCDMCEKSFPNTTALKDHLRSHTGESPYLCSHCGKSFKTANVLREHLQRHGEKNVQCPECPMKFYSKVNLTKHMTTHSKVKRHVCDECGSAFTRQDSLKAHKFKHTGLRPFKCEECNLSFVFKGHFQKHQIIHAGKKPHQCTYCDRAYASSGDLVKHLRTHVGEKTYFCDECPEAFKYLNDLKDHKNQHYKKKLALQKNNDDEVQQTTVVEDVKPNVDAITTDCLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -