Basic Information

Gene Symbol
ct
Assembly
GCA_949748255.1
Location
OX456525.1:136647526-136721888[+]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 6.2e-27 1.6e-22 80.8 0.0 3 72 939 1009 937 1014 0.94
2 3 5.8e-32 1.5e-27 96.9 0.0 3 77 1370 1445 1368 1447 0.96
3 3 7.3e-31 1.8e-26 93.4 0.0 3 76 1626 1700 1624 1703 0.96

Sequence Information

Coding Sequence
ATGAATATGAAGGACATTGACAATGTTGAGAAGTTTATAATGagagCTACCTTAGCTGAAAAGGAAGTTAATACTCTGAAGGAACAACTATCCACCAATACCCCCAACACAGAATCAGATAGTGATAATAACGGTGAATTAGCTTTAGCCACCAGCACAGCTAATAACACTTTAGATTCCACAAACGAAGCTTTTAACGCTTTAGCAACAGAAATCCCACCAAATAATAAACTCTTATCGCCCTCGTTCAATaacaacaatacaaaattattgaataGTGTTGCGGCTGCTATAACCCTACATCAAAACGGTGGTAATTTACTGGCTACCACACCCTCTCCCTCGCCACCCCTGTCGGACAGTGGTAACAACGGTAGCGGCAAcgaacagcaacaacaattgaACGGTTGTTTAAAtcctaaattgtttttcaatcaCGCCCAACAGGTAATGATGATGGAAGCTGCAGCTGCTGCAGCGGCCGCCGCGGCTGCTGCTGCTGCAGTACAACAGCAACAGTCACCTATGAATTCACCACAACCTCCTGCTACGCACCAGCAACAACAGGAAGACCAGCAGCATGAACATATACAACCCACCAATACAAAGGAAATCAAAGATAATTTAGCATTAGAAAATGCTTTAACCAACTCCAAAATAACAACAGCAAGTGATACTCAACAACAAACACCGGATAAACGTGACATTAATAACACTCATAATAAAGTGGAAGaggagcaacaacaacagcagcaacatgaTAACAATAATGCTGCTGATAGTGCacatagtaataataataataatatcatCAATAGTTTTAGTAGtgataataatacaaaaaatagtataaattcaATGGTTACAAATCAAAATTGTACGGAAACGGAAATAGAAAAGACAAAGGAACAGCAACAGCAAGAAGAAGATGAAGATGCACATATAGACACCGAAGAATTAAGAGGGAAATTATtagataataataattataacaaagaAACGATAAACAATCATATGGAATTATTAGCTGCCAAAGATAAAGAGATTAAAGCCTTATTTGAAGAAGTTAAACGTTTAAGATCTATAGAACAAACTCATATGGTACAAATCCATAGACTAGAAGAACATTTAGAAGCTAAACGTCAACATATTATGCGTTTAGAATCAAAATTAGATAAACAACAAATCAATGAAGCTTTACAGGAGTCCCAacaacatcagcaacaacaagaacagcagcagcagcaacaacagcaattgGCTGAATGTAAAGAATTGGAAAAAGAATCCATGGAGGTGGTAGAAGATAAAGAAAATGAGGAGGAAGAAGATGAAGACGAAGATATAACAGAAGTAGTAAAAGAGAAAAACTGTGATTTAACTGAAGAAATTGAAGATGATCGGGATCTGGAGGAAGACGAAGATGTACAAGAAACTCACCAAATTTCCGATGATGTAGAAGAAACCAATAAGGATTCAttaaatgaaatcaaaattaaaaaggaaacaCAatCACCTTTATCTTTAGACTCTATAAGCCAACAAAATGCCATTGCTGCAGCCGCCGCCGCAGCTGCTGCCTGCAATAATGATCCCAATAAATTCCAGGAATTATTAATGGAAAGAACCAAAGCTTTGGTGGCAGCCGAAGCTTTAAAGAATAcagaagAACTAAGTTTAATTAACAACGAGCCTAAAACAACACTAGCAACAAATGTTGCTAGTAGTTGTACACAAGATGTTGAGGAACATGTTGAAGCCTCAAAAGtgccaaaaatagaaataatcgaagatgatgatgaagctgaacatgaaaatgaaaatgagcATGAAACTCAAAATCtagaaaaatctaataaatgtTTAGACAGTTCAAATGTTGATTTAACTACTACCATAGACTtggataatttatcaaattctgAAAAGCCTGATGATGAATTAGAAGATACGGCAACATTTAAACAAAGTGTTGAACGTTTTGGTACTTTATTAGGTGAAGAATTGGTGAACTCCTATTGGAGAAGAGGTTTTGATCaaacaaaatctttatatcCTAATAAtttacaacagcaacaacatcatcatcatcagcaacaacatcaccaacatcatcagcaacaacaacagcatcaaCATCAACAACTGATGATGCAACAAGCCGTCCATCAACCAgtacaacatcatcatcatcagcaacaGCATCATATACCACCACAACCACCTTGTGGTCCTTCTTCAACAACTTTGCTTAGTCAATTAGTTAATTCTACTTTTTCTACTCCCAACTCCAACACTCACTCTCAAAATTCTTTACGTTCAACAGATGGTTTTACACATCAACAATCACATCATCATCCACATCATCATCACCTACAACACCACCACCAATTGCCTCCTCATTTAGCTGATCAGCATGATAAATCCTCAATGAATCATCACGATTCTTCAGCCTCCAGCGCCAGTACACCCAACTTGCaggaacaacaacagcaacgtAATAATGAGGATCATCACAATTTATCTATTAACGGTTCATTAAAGAGTTTGGAAGATAATAACAACAGTCTGTGTGCTACACCCACCAGTCACATGGGTGGAGCGGGGCATCCGCATCATTTGCCACATGGCTTTTTACCCGGACTACCATTCCAATTTCAAGAACGTGGTCATTTTAGATTTGCCGATGATTTACAATTGCCACCGGGCACTTCAATGGCTGGTCGCTTGGGAGAGTCATTAATACCCAAAGGTGATCCCATGGAGGCTAAATTGCAGGAGATGTTAAGATACAATATGGATAAATATGCCAATCAGGCTTTGGATACTTTGCATATATCCCGGCGGGTGCGAGAGCTCTTGTCGGTGCACAATATTGGCCAGCGTATATTTGCCAAATATATATTAGGCTTATCGCAGGGTACGGTGTCAGAATTGCTGTCAAAGCCTAAACCCTGGGATAAGTTGACAGAAAAAGGACGTGACAGTTACCGCAAAATGCATGCCTGGTCATGTGATGATAACGCTGTTATGTTACTCAAATCGTTGATACCCAAAAAAGATTCTGGTTTACCTCCATATGGTGGTGGTCGTGATGATTCAATGTCTGATGAACGTAttgcacatattttaaatgaggCTTCCTCTTTAATGAAAACATCAGGACCCTCTGGTTTACATCAACATCAAGAACATCAACGTAGAGCTTCTACCATTCCCGAGGATTCACGTAGCAATGATGATTCCAAATCTCCCCACCAACCTTGCGCCTCTCCTTTCCTCAGAGATCATCATAGCAAGTCTCAGGGAGAGACTCCCATGCCGGGTCAACAACATTTACGTCCAGATGATATGAATCCTGAGAAAATGGCCAGATTATATCAGGAAATAATGGCCAGAGCTCCCAGAGAGGCTTTTCCGGGTTTTTTACTTTCTCCCTTTTTCAGCGGCGGTTTACCTTCTGCAGGCGCCATGGCCGGAGCCAATGCTTTTCCTGCTTTAGCATCCGATGAAAATATGCGTTTAGCCTTTGAACGGGAAATGTCTAAattacaacagcaacaacaacagcaacatgcTGCCGCAGCTGCTCAACCTCCCAACTTTGCCAATTTCTCTAGTCTTATGGCTTTACAACAGCAAATGTTAAATGGCGCCCAGGATTTATCTTTAGTTACTGAGGAAAAATCCAAGGATGGTAAAGTTAATGGCCAACGTAATTCCTTTGAAGGATCACAAAACTCTCTTAGCAATCATGGCCAGACCACACCAAATGCCAAAGATTCTTCTAATTCAGAAGTAGATAGACTTTATCCTGGTATGGTTAAGTCCGAACAGGGCAATAAAACACCAGCTCCCTTAGCCTCCAGCAATGCTTCTACCACCAATACAAATTCCGCGGCTCCCAGTCCTCTTAGTAACTCCATACTCCCGCCTGCTATGACACCAAGCGAAGAATTTTCTGCCACCGCTTCTCCTCTACAGCGTATGGCTTCCATAACAAATTCCTTGATAACACAACCACCAGTACCACCTCATCATAATCCTCCACAAAGACCTACCAAAGCTGTTTTGCCCCCCATAACTCAACAACAATTTgatatgtttaataatttaaacaccGAAGATATTGTTCGACGTGTCAAGGAGGCCTTGTCACAATATTCTATATCACAGCGGCTTTTTGGAGAGTCTGTATTGGGTTTGTCCCAAGGTTCAGTTTCAGATCTTTTGGCTAGACCTAAACCCTGGCATATGTTGACGCAAAAGGGCAGAGAACCCTTCATACgcatgaaaatgtttttggaaGACGAAAATGCTGTACATAAGTTAGTGGCTTCTCAGTATAAAATAGCTCCAGAGAAATTAATGAGAACTGGTAATTACAGTGGTTCTCCACAAATTCCCCAAGGATTAGCCAGTAAAATGCAGGCCTCATTGCcaatgcaaaaaatgatgagTGAATTGAAATTACAAGAACCGGCTCATATCATGCAACAAATGCAGGCCGCCGCTGTAATGTCAGCAGCCATGCAACAGCATCAACAGCAACAGGCAGCTGCAGTGCAACAAAGTCAACAACAGGCTGCCCAGGCGGCAGTACAAGCTGCCCAGGCAGCGGCTGCTGCTCAACAAGCAGCCCAACAGCATCATCAATCCATGTTGCTGACTTCTCCTGGCTTACCACCACAACATGCTATTGCTTTACCCTCAGCCGCCAGTTCACAACCTTCCTCGGGTAATACCACACCAGCTGGTCCCACTCCGGATAAGAAACCCATGATGATGCCTATACACTCACCCCACCAAGCTAATGCCATGCGTAATATGCATCAACATATGTCGCCCACCGTCTATGAAATGGCAGCTTTAACCCAAGATTTAGACACACAGGTTATAACCACCAAAATCAAAGAGGCTCTATTAACCAATAATATTGGCCAAAAAATCTTTGGCGAAGCCGTGTTGGGTTTGTCCCAAGGATCCGTATCGGAATTATTAAGCAAACCTAAACCCTGGCATATGTTGTCGATAAAGGGACGAGAACCCTTTATAAGAATGCAATTATGGTTATCCGATGCTAATAATGTAGAACGTTTACAAGCTTTGAAAAATGAGCGTAGAGAGGCGTCTAAAAGAAGACGTTCTACCGGACCTAATCAACAGGATAATAGTTCAGATACCAGCAGTAATGATACCAATGATTTTTATACCAGTAGTCCGGGACCCGGTTCGGTAGGCAGCTCAGGAGCTCCGCCTAATAAGAAACAACGAGTATTATTTTCCGAAGAGCAAAAGGAAGCTTTAAGATTAGCCTTTGCTTTAGATCCCTATCCTAATGTGGGTACTATCGAGTTTCTGGCCAACGAATTGGGTTTGGCTCCACGCACCATAACCAATTGGTTCCATAATCATCGTATGCGTTTGAAGCAACAAGTGCCTCATGGTCCTCCCGGTCAAGAAACAAATATACCCACTAGAGAAAATACCAATTCCACACCTTTTGATCCCGTCCAATTTCGTATATTACTGCAACAAAGATTATTGGAATTACATAAGGAGCGCATGGGCTTAGGAGGTAATACGCCCTTGCCCTATCCACCTTATTTTGCAGCAGCTGCCTTATTAGGACGCAGTTTGGCGGGTATGCCTGGCACCAATGCTCAATCTGCCTTACCTACCAATGAGGCTGAGTTGAGAGCCTTAAATCAAGCTTTTAGAGAACAAATGTCGGGATTAGATCTATCAATGAGTTCTTTGAAACGTGAAAGATCCGATGAGTTTGAGGACGATATGGATGAGAGTCATTTATCagaaaatgaaaatgatttaGATGATGATGAGGATAAATCGAGTGAATACAGAAATTCAGCATTTAATTCCATGAATGCAcaacattttctaaataatatgcGTTCAAATCGTAGAAAACCTGCCGCCCCACAATGGGTTAACCCCATAGGACCTTTAGTTGGCGATACTGAACGTATCATTAATGGAGTTTGTGTAATGCAgggcaacaataataataacaatgaaGAATCCCAACAAAATGCAACCGAAGAAGACATGCAAAAATCTCTGGACAACGAAGATGATGTGGATACACCCCATCAATCTGTTATGGAACCAGAAGTGGTTATAAAGCAGGAAAAAGAAGACTGTGAAAGTGATTccgaaaaaatccaaaatgaagAAGGTCAGGCAACGGGTATTAAATTGGTACAAGAAGATAAATTAAGAATGGTGCGGGTTAATCGTTTAAGCAATGAAGAGGAGACAATAACTAGACCGACAGCAGCGACCACACAGGAAACAGCGTGGAATTATTAG
Protein Sequence
MNMKDIDNVEKFIMRATLAEKEVNTLKEQLSTNTPNTESDSDNNGELALATSTANNTLDSTNEAFNALATEIPPNNKLLSPSFNNNNTKLLNSVAAAITLHQNGGNLLATTPSPSPPLSDSGNNGSGNEQQQQLNGCLNPKLFFNHAQQVMMMEAAAAAAAAAAAAAAVQQQQSPMNSPQPPATHQQQQEDQQHEHIQPTNTKEIKDNLALENALTNSKITTASDTQQQTPDKRDINNTHNKVEEEQQQQQQHDNNNAADSAHSNNNNNIINSFSSDNNTKNSINSMVTNQNCTETEIEKTKEQQQQEEDEDAHIDTEELRGKLLDNNNYNKETINNHMELLAAKDKEIKALFEEVKRLRSIEQTHMVQIHRLEEHLEAKRQHIMRLESKLDKQQINEALQESQQHQQQQEQQQQQQQQLAECKELEKESMEVVEDKENEEEEDEDEDITEVVKEKNCDLTEEIEDDRDLEEDEDVQETHQISDDVEETNKDSLNEIKIKKETQSPLSLDSISQQNAIAAAAAAAAACNNDPNKFQELLMERTKALVAAEALKNTEELSLINNEPKTTLATNVASSCTQDVEEHVEASKVPKIEIIEDDDEAEHENENEHETQNLEKSNKCLDSSNVDLTTTIDLDNLSNSEKPDDELEDTATFKQSVERFGTLLGEELVNSYWRRGFDQTKSLYPNNLQQQQHHHHQQQHHQHHQQQQQHQHQQLMMQQAVHQPVQHHHHQQQHHIPPQPPCGPSSTTLLSQLVNSTFSTPNSNTHSQNSLRSTDGFTHQQSHHHPHHHHLQHHHQLPPHLADQHDKSSMNHHDSSASSASTPNLQEQQQQRNNEDHHNLSINGSLKSLEDNNNSLCATPTSHMGGAGHPHHLPHGFLPGLPFQFQERGHFRFADDLQLPPGTSMAGRLGESLIPKGDPMEAKLQEMLRYNMDKYANQALDTLHISRRVRELLSVHNIGQRIFAKYILGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWSCDDNAVMLLKSLIPKKDSGLPPYGGGRDDSMSDERIAHILNEASSLMKTSGPSGLHQHQEHQRRASTIPEDSRSNDDSKSPHQPCASPFLRDHHSKSQGETPMPGQQHLRPDDMNPEKMARLYQEIMARAPREAFPGFLLSPFFSGGLPSAGAMAGANAFPALASDENMRLAFEREMSKLQQQQQQQHAAAAAQPPNFANFSSLMALQQQMLNGAQDLSLVTEEKSKDGKVNGQRNSFEGSQNSLSNHGQTTPNAKDSSNSEVDRLYPGMVKSEQGNKTPAPLASSNASTTNTNSAAPSPLSNSILPPAMTPSEEFSATASPLQRMASITNSLITQPPVPPHHNPPQRPTKAVLPPITQQQFDMFNNLNTEDIVRRVKEALSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDENAVHKLVASQYKIAPEKLMRTGNYSGSPQIPQGLASKMQASLPMQKMMSELKLQEPAHIMQQMQAAAVMSAAMQQHQQQQAAAVQQSQQQAAQAAVQAAQAAAAAQQAAQQHHQSMLLTSPGLPPQHAIALPSAASSQPSSGNTTPAGPTPDKKPMMMPIHSPHQANAMRNMHQHMSPTVYEMAALTQDLDTQVITTKIKEALLTNNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDANNVERLQALKNERREASKRRRSTGPNQQDNSSDTSSNDTNDFYTSSPGPGSVGSSGAPPNKKQRVLFSEEQKEALRLAFALDPYPNVGTIEFLANELGLAPRTITNWFHNHRMRLKQQVPHGPPGQETNIPTRENTNSTPFDPVQFRILLQQRLLELHKERMGLGGNTPLPYPPYFAAAALLGRSLAGMPGTNAQSALPTNEAELRALNQAFREQMSGLDLSMSSLKRERSDEFEDDMDESHLSENENDLDDDEDKSSEYRNSAFNSMNAQHFLNNMRSNRRKPAAPQWVNPIGPLVGDTERIINGVCVMQGNNNNNNEESQQNATEEDMQKSLDNEDDVDTPHQSVMEPEVVIKQEKEDCESDSEKIQNEEGQATGIKLVQEDKLRMVRVNRLSNEEETITRPTAATTQETAWNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01109239;
90% Identity
iTF_00716526;
80% Identity
iTF_00716526;