Basic Information

Gene Symbol
-
Assembly
GCA_951802225.1
Location
OX637667.1:1470287-1506664[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 6.6 4.6e+02 2.1 0.2 2 22 450 470 449 471 0.80
2 14 0.0054 0.38 11.8 0.0 1 23 481 504 481 504 0.96
3 14 0.0068 0.47 11.5 1.7 1 21 645 665 645 666 0.94
4 14 0.075 5.2 8.2 3.7 2 23 728 749 727 749 0.95
5 14 3.2 2.2e+02 3.1 0.4 1 23 761 784 761 784 0.89
6 14 0.0013 0.09 13.8 0.6 2 23 791 814 790 814 0.95
7 14 0.017 1.2 10.3 0.4 1 23 820 842 820 842 0.93
8 14 0.013 0.89 10.6 3.4 1 23 848 870 848 870 0.98
9 14 0.87 61 4.9 0.0 2 15 880 893 879 896 0.86
10 14 0.0036 0.25 12.4 0.2 1 23 985 1007 985 1007 0.97
11 14 2.1 1.5e+02 3.6 7.2 1 23 1014 1036 1014 1036 0.95
12 14 0.0014 0.099 13.6 1.8 1 23 1071 1094 1071 1094 0.95
13 14 0.014 0.99 10.5 0.9 1 23 1101 1124 1101 1124 0.98
14 14 0.014 0.96 10.5 0.3 2 23 1146 1168 1145 1168 0.95

Sequence Information

Coding Sequence
ATGGCGGAAGATCAGCAACCACTTCTGCTCTGCATGGAAAATATGAAGGGCGAAGAGGTGACACTCGCCATATCGCCGCATGACGACTTTAACGCTTTTCTTGCTAAAGCTAAGATGATCTTAGGATTCGACGTCGATCTGAATTCAGTAACGAAAAACCATCCGGTACAATTAACTGATAATATCTACCAGTTCCTCATTCAGAATGAGGCAAAAACTGATGAAGACCAACCAGGGCAAACGTTGGAGCAGATGCTCGAACAGAGTTCCACTGATTTAGTATACATTCTAGACGATGGCACTCAGATTAACGCTTCTCAAATTCATTTCGATAACGATGATCTCTTCACTGATTTAACAAAAGAAAGTATCCCTTTTGTAAAGAACACTGATTGCGTTGAAGAGATACCAGAAGATAAGAATGTTGAGGAAGATAAAACTAAAAAGCTCAACATACTAGCAAGTCCAGTAGTAGCACAGAATTCAAATTTCATAAACAGTGTACCATTCAAACTAGTTTGCAGTAACACTTCAGGTTTCGAAGCTCAGTTCATAAAACATTTACAAGGAAAAACTTATACGACACTTAACACGGTTGTTACAAAGAAGTCGCCTAAAACTCTAATAAAAGATAACTACAGAAAATACGTGAACGAGGTCAAAAAGGCGGAAAGTCTAAAACCGTTTTCTAGGGATGATATTGTAAATATGATGAAAGACAGTCCGGTCGTTATACCTAACAATATGAGAGAGAAACGTCGTCATAATATTAGGAAAACTAATCCTTTACCAATTTATAAAAAGCCCAAACCCTACATAGATCTACCCTACTTTCCTATAGGCAATCTAGAAAGTCAGGATTGCCTTATTTGCTCAAAATACGTTGATAATACGTTGGAGCGATTGTATATTTTCGATAAGGAAGACCAAAAGTTGCATAGATCATCGCCACAGAAGCGCCGATTGACACAACTCAAAATTCTATGCCAGTTTTGTCTAACAAGTAACTTTCAACAATGCCCCATAGAAACGCAGAATCGAGCGTTGAATTCTGATGAATATCTTATTATAAGGAATAACCAGCAGTACATATATCGTCTTACAAATCCGAGTTGCTTTCGTAAAGAGATACAAATACCTGAAGTAACAAAGGTGGCTATAACGAATGTGCCAGTTGAATCTCTAAAAGCTGTTGAAACAGTTGTAGCTAAAGAAGAAAAGATTATTGATATAGAAATAATTGATCAAACGACTGATATTGATCAGGTTATTGAGAATCTGGAGGAGGCGGATGAAGATGTGAAAGTGTTTTTGGGGAAGTATCAAGAATGTTTTGATAAGGATTTGGTTTGCAGATTCTGTCAGCAAACTTTTACAGAGATACAGAGTGTTATAGATCACGGTAGTGAGCACAAACACGATTTGGACGACGGAGAGGTGTACCCGTGCCCGCTTTGCGACTACGGATATGCTGATTTTAAATGGCTCAAAGGTCACATAAAAGCTGCTCACGAAAGGTCTGAAAAAAGCACTGATAAAGATAATGATTCTAAAACTGTTAACAATGAAGACTGTATtgataacacaaaaaatattgATCCCAAAATATCTGATAATGTGGATACCAAGGAACCAAAGTCTCCAATCAAAACTACATCGCCGATTGCTAAAAGAACAAGAAGCTCCACTAAGAAGAAGGAAAATGGTGacgaaatagaaattGAAGAGGAAATCACACAAGAAAATAAAGAGGATGATGGCGATAACGTTGGTAAAAGCACAACGGAAACCGACTCGCACGTTATATCGACGGAAGTTAAACAGGAGTGTATGGACTCTGATGACGCGATATGGATAGTCCACACCGATGACTCTGATCTCGACCAGCGTGGGGCCAAGgtTGAAAAGCATAAGAAGGTTGACCCTTTCAGTCACAAATGTCTAAATTGCGATAAACTCTTTAAGAATGCTGAAGCGCTAACGATGCATAGATGCGTCAAGAATGGAGGAACGAAACGTAAATCATTTTCTGATGACGAAGAAGAAGTCTGTATACCGTCGAAGCAGGACTTTTTAAAGAGAGCGCACGGTAAAGCAAAGAAGCCAAAAGAGGACGGCGAACAAAAGAGCGAGAAAGCGAAAGAAAAGAACTACGGTCCGACCACGGACGCAACTATAGTCACCTGCCACAACTGCAATGAGAGTTTCAACTCTAAAGTGCGATTGAAGTTTCATATGCAGTTCCACTCGGGCGCGTGGGCGCGCGCGGCGGACGGGCAGTACCGCTGCGCGCGCTGCCCGCGCACGCTGCCCGCCGAGCGCGAGCTGTTCGACCACGTGCACTTTGCCCATCTAGCGCGCAAGCGGTGGCAGTGCCCGCTGCCTAGCTGCAAGAAGACTTTTCGTTTGAGGGCAACACTGACGAAGCACAGTCGCATCCACACGGACACTCGTCGCTACGTCTGTCCGACTTGCGACAAAAGATTCCTCGACAAGCAAACGTTGGACGAGCATAGCGTCACTCATTTACAGACTAAACCGTTCCAATGCCACATCTGCATGAAGCAGCTAACGCGTCGCTCCCGACTGCGAATGCATTTGCGCGCCCACGAGGAACTCACGCCCACGGCACTGCTGGTCTGCGGGCGCTGCCACCGCGCCTTCCGCGACCAGGCGGAGGTCGAGGCAAGTACAGTATTACAGTATAGGAAAGCTTCAACAAAGGAACACGCACAAACGTCGAGCTCGTGCCTGTACGAGATGGCGAGCGAGCTGAAGCAGGGCTCTGAAGATGTCAAGTTGTCACCCAGCAGCGGCATTATTACTAAGACGATTTCTCCCaGTGTGAGGGCGGTCCCGCGCGCGGCCAGCCCGCCGACGGCAGCGCGCCTGCTGCGCGGgctgggcggcggcgcgcgcgcgctgGCCCGCGTCGCGCGCGCCGACCGCGCCTTCCGGTGCGAGTACTGCGAGGAtgTATTCTACACTGAGGAGGGCTTGAACAAGCACCGCGCTATCCACAAGGGCGTCAAGAACCCTTTCACTTGCCACATCTGCAAAGTTAGCTTCGCTACTTATTCCAGATGTACAACACATAAAACTACTCACGGATTTTACAAGCGCCCCGTGGAAAAGCAGGACTCTGAACCAAAGAGTGGACAGACCAATCAGGACATTCTTGGCTACGGTGACTTTCCAGTTGCGAAGCATTTTTTATGCGAGGACTGCGGCCGCTCGTACCTGCACTGGACGTATTTGCAAGTTCACAGGAGAATGAAGCACGGGACTGACAATTTTGTATACAAATGCAACAGTTGCGAACTCACTTTTCCTAACAGTTGGAGTGTTTCGTATCACAGAAAGAAGGCGCACGGGAAAACGACGCAAGAGGACGAGAATGGTGTCACAAAGATATCTAAGACTGATTACAGGATCCCATGCAGAGATTGCGACGAGTTTCTGCCAAACAAAACTGCTCTTTACAAGCATCGTAATAAGGAGCATAGTGACTTGTCACTCTTGGAGGATAAACcagAAATATtttggtgcatggcgtgcggaAGCAAGTTCCAGAGCCGCACAGCGATGGCGGCCCACAACGCGCGCTGTAACAACCTCACTGAAAACGTACGAAAACAGGACAAGTGGCGCCCCAGCACTACTGGTGAGTGGGGCACAGCAGGAGCGCGTCGCCGGCGGGCTCGAGGCGGTAGGTGGACTTGTCCGGCAGGTGGCGCCCCAGCACTACTGGTGAGTGGGGCACAGCAGGAGCGCGTCGCCGGCGGGCTCGAGGCGGTAGGTGGACTTGTCCGGCAGGTGGCGCCCCAGCACTACTGGTGA
Protein Sequence
MAEDQQPLLLCMENMKGEEVTLAISPHDDFNAFLAKAKMILGFDVDLNSVTKNHPVQLTDNIYQFLIQNEAKTDEDQPGQTLEQMLEQSSTDLVYILDDGTQINASQIHFDNDDLFTDLTKESIPFVKNTDCVEEIPEDKNVEEDKTKKLNILASPVVAQNSNFINSVPFKLVCSNTSGFEAQFIKHLQGKTYTTLNTVVTKKSPKTLIKDNYRKYVNEVKKAESLKPFSRDDIVNMMKDSPVVIPNNMREKRRHNIRKTNPLPIYKKPKPYIDLPYFPIGNLESQDCLICSKYVDNTLERLYIFDKEDQKLHRSSPQKRRLTQLKILCQFCLTSNFQQCPIETQNRALNSDEYLIIRNNQQYIYRLTNPSCFRKEIQIPEVTKVAITNVPVESLKAVETVVAKEEKIIDIEIIDQTTDIDQVIENLEEADEDVKVFLGKYQECFDKDLVCRFCQQTFTEIQSVIDHGSEHKHDLDDGEVYPCPLCDYGYADFKWLKGHIKAAHERSEKSTDKDNDSKTVNNEDCIDNTKNIDPKISDNVDTKEPKSPIKTTSPIAKRTRSSTKKKENGDEIEIEEEITQENKEDDGDNVGKSTTETDSHVISTEVKQECMDSDDAIWIVHTDDSDLDQRGAKVEKHKKVDPFSHKCLNCDKLFKNAEALTMHRCVKNGGTKRKSFSDDEEEVCIPSKQDFLKRAHGKAKKPKEDGEQKSEKAKEKNYGPTTDATIVTCHNCNESFNSKVRLKFHMQFHSGAWARAADGQYRCARCPRTLPAERELFDHVHFAHLARKRWQCPLPSCKKTFRLRATLTKHSRIHTDTRRYVCPTCDKRFLDKQTLDEHSVTHLQTKPFQCHICMKQLTRRSRLRMHLRAHEELTPTALLVCGRCHRAFRDQAEVEASTVLQYRKASTKEHAQTSSSCLYEMASELKQGSEDVKLSPSSGIITKTISPSVRAVPRAASPPTAARLLRGLGGGARALARVARADRAFRCEYCEDVFYTEEGLNKHRAIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRPVEKQDSEPKSGQTNQDILGYGDFPVAKHFLCEDCGRSYLHWTYLQVHRRMKHGTDNFVYKCNSCELTFPNSWSVSYHRKKAHGKTTQEDENGVTKISKTDYRIPCRDCDEFLPNKTALYKHRNKEHSDLSLLEDKPEIFWCMACGSKFQSRTAMAAHNARCNNLTENVRKQDKWRPSTTGEWGTAGARRRRARGGRWTCPAGGAPALLVSGAQQERVAGGLEAVGGLVRQVAPQHYW

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-