Eaur003367.1
Basic Information
- Insect
- Euspilapteryx auroguttella
- Gene Symbol
- PRDM15
- Assembly
- GCA_951802225.1
- Location
- OX637643.1:2268707-2269999[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00013 0.009 16.9 3.1 1 23 118 141 118 141 0.97 2 9 2.4e-05 0.0017 19.2 0.7 1 21 146 166 146 167 0.96 3 9 0.0056 0.39 11.7 0.2 1 23 219 242 219 242 0.96 4 9 5.1e-05 0.0036 18.2 0.7 2 23 250 271 249 271 0.97 5 9 0.00013 0.0093 16.9 2.1 1 23 276 298 276 298 0.95 6 9 0.00096 0.067 14.2 0.8 2 23 305 327 304 327 0.94 7 9 2.6 1.8e+02 3.4 0.4 2 23 334 355 333 355 0.92 8 9 0.0096 0.67 11.0 0.2 1 23 360 384 360 384 0.97 9 9 0.00091 0.063 14.2 3.8 1 23 390 413 390 413 0.97
Sequence Information
- Coding Sequence
- ATGTTATTAATGTCGCTGTTTGAGCCATACAAGGAGACCTGCGTTTCTCAGCACATAGTTGCCATCACGGGCATCGAGATGAGCCCGGGCGACGGACTCCCGGACAGGATATGCAGCGCCTGTCTCGAGGAGCTGGAGACGGCGATACACTTTAAAGAAAAATGCAAGATCTCAAACATTCAGCTGCACAGAAACTTATTAGAAGAAAAAGTAGACATTAAAAAAGAGGAACCTGATGAATATGAAGACTTGACATATTTAGAGAGTACATCAGACCATGAAGATATTGTTTCTGATAAGCAGGAAGACATAGATATTAATACAGACAAGTTTATTCCTCCAGTGACTAACTTCGAGTGTCATGACTGTGGAGAAGTCTTCAAGAGCAAGTGCAAAATAAGGGTGCATTGGCAAAGGATCCACAAGCCCAAATCCTATACATGTGAAAACTGCAAAAGGGTATTTAAATCACTATATGCTTACAATAggcatataaaaataaaaactaaaggcTGTGCAACAGTAGCACTGGAGGGAGTGCGCGTGGAAGGTGAGGGCAAGTCGAGAGTGTTCCACTGCTCCTTCTGCAATTACAATTCTAAAcatattaattatataaaaacacaTACAGATACTCACAGTGGCAAGAAACCATTTGCATGCAATCTGTGTCCAAATAAGTACTCTCAAATGGGTGGCCTAATAAGACACAAAGAAACTTCTCACAATGAGCACAGACTGGAGATAACCTGCACCTTCTGCGGGAAGATTTACATAGGACGTGAGAACTTCAGCAGACACCTTAAGACACATTCTGACCAGCGCTACCAGTGTGACCTATGCAAGAAATTCTTAAAAtccaaatcaaatttaaaagaCCATTTTGAGTGGCATTCAGgagttaaaaagaaaatgtgtGATATATGTGGCTCAAGATTTTTCACAAAGTCTGCATTATTGAACCACAAAATATCCAGgcatagagaaaaaaaaattgttaaatgcAAGTTTTGTCCATACAAGGCTGCCACTAAGAGGGTAGTAGTTGAACATGAAAAGAAACATAGTGATAGCAATTTTGTATGTCCAAAGCcaaaatgtaatttaatttttgagaGCGAGCAAAGTTTTAGAATCCATGAACAAAGCCATATTGATGGTAAGATTCATGAGTGCAGTTTGTGCAAGGAAAGATTTAAACGGAGAGTGTACTGGGTCACCCACATGAAGAGGAAACACAATACTATAATCAACAATGATGTTAAACAAGAAATATCCTCACCATTAAGATAA
- Protein Sequence
- MLLMSLFEPYKETCVSQHIVAITGIEMSPGDGLPDRICSACLEELETAIHFKEKCKISNIQLHRNLLEEKVDIKKEEPDEYEDLTYLESTSDHEDIVSDKQEDIDINTDKFIPPVTNFECHDCGEVFKSKCKIRVHWQRIHKPKSYTCENCKRVFKSLYAYNRHIKIKTKGCATVALEGVRVEGEGKSRVFHCSFCNYNSKHINYIKTHTDTHSGKKPFACNLCPNKYSQMGGLIRHKETSHNEHRLEITCTFCGKIYIGRENFSRHLKTHSDQRYQCDLCKKFLKSKSNLKDHFEWHSGVKKKMCDICGSRFFTKSALLNHKISRHREKKIVKCKFCPYKAATKRVVVEHEKKHSDSNFVCPKPKCNLIFESEQSFRIHEQSHIDGKIHECSLCKERFKRRVYWVTHMKRKHNTIINNDVKQEISSPLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -