Basic Information

Gene Symbol
-
Assembly
GCA_951802225.1
Location
OX637670.1:2222243-2225770[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.00054 0.038 14.9 1.9 2 23 7 29 6 29 0.96
2 15 0.0093 0.65 11.1 1.5 1 20 34 53 34 57 0.90
3 15 0.092 6.4 7.9 1.7 1 23 64 87 64 87 0.94
4 15 0.0013 0.088 13.8 0.3 2 23 94 116 93 116 0.95
5 15 0.19 13 6.9 0.5 1 13 123 135 123 141 0.78
6 15 0.051 3.6 8.7 1.4 2 23 175 197 174 197 0.93
7 15 0.088 6.2 8.0 4.4 1 23 782 804 782 805 0.96
8 15 0.0086 0.6 11.2 0.4 1 23 837 860 837 860 0.94
9 15 0.00012 0.0081 17.1 0.1 1 23 873 895 873 895 0.97
10 15 0.00035 0.024 15.6 1.4 2 23 899 921 898 921 0.96
11 15 0.065 4.5 8.4 2.9 1 21 926 946 926 947 0.95
12 15 0.43 30 5.8 1.2 1 23 998 1021 998 1021 0.95
13 15 0.0017 0.12 13.4 0.5 1 23 1029 1052 1029 1052 0.92
14 15 0.0089 0.62 11.1 1.4 1 23 1096 1119 1096 1119 0.94
15 15 0.014 1 10.5 0.7 1 23 1126 1149 1126 1149 0.96

Sequence Information

Coding Sequence
ATGGAGCAAAACATCAAATCCTGTCCCCACTGCTCCGAGGAGTTTACCAACAAGACAGCATGGAAGGATCACATGCTGAAAACACACAACATCCTTGCATACACGTGCGATCTTTGCCCAAAAACATTCTTTGAGCAAGCCGATTTCATTCaccattttgattttgaacacAAGTCAGACTTCAACCGTCATGTTTGCAGTTACTGTGGTGTCTCTTACAAATGGTTTAAGTTTCTAAACAAGCATATCAAGGATAAACACCAGATAGAGAAGCTGATGGAATGCAATGCATGCGGTGAGGAATTCTACAATTCGGTCGCTTTCAAAAAGCATCTACGCTTGAAACACAGCGGTGGGTGGAAGTTTCACAAGTGTAGAAAGTGTCATCGCAGTTTCACAGCTAGAGAGTTAATTGTACTTCATGATAAGTTTGATCACAGTAGGAATGGTGATCATCATTTCAGAGAGTATGCCGCTACCCATCTGACTATTGAGGATGAGGATCTCCtcgaaaattcaaaaaagtgcATCAAATGTAATCTTGAATACACCAGCTCGATTTACCTGATGAAGCATTTGAAAACTACCCACAATAAGCATAAGTATTTTAGGTGCTGCAAATGTGAAGATGCCTTCTACAATACGAGAGCAGGTCTCAGCATTCATTTGTACTACGAGCATGGAGTACCCAGAGAGCATAAGTGCAATAAGTGCCGCTACGGATACTCTAAAGCTTTTGTCAATAAAATCAGAAAAAATAAAGAGAATTTAACAAAGGACCGCTTAATTGACGAGTCTGAAGCAGTACTGCCGTATTGGGCCAGAGACTTTGTAAAGGAAGAGCTTCCGAATAGCGTAGACCTAGTCGGTGCTACAGAACAAGAGATACAGAACCTGtgtaataatattaagaatCTATTCCATGTCCTGTCTACAGTACCGCCTTCAAAGTTGCGAGGTACCACGGTAGTCGATCCTTATTTACAGTTTCATTCGGCAAGGAAGAAGTTGTCTGATGATCTGAGAAGGGACTGCAGAAGGCGTGACGAGAAACATTTTACTAATACTAATGGTACTAGTGAACCTACTGAAATCGAGAGACCCAAAAGAAAATTAGTTTTCAATAAAAGCACTAATGAAGTGTCACCTGCCAAAAGAAAGCGTGATGAAATACCAGAGGCCCACCTGAATGCTAATGACCCAAAGGTTTGCGAAATAAGAAATCTAAATACTGAAACAAGAAAACCAAGGCAAACAAAGAACTCTGATGATATTGCTAAAGAGCATAATAGTGGACTCTCTGATGATACTTCTTTACAAGATCATGATAATGTCAAGCACAGCACTGAAGTTAAAGAAAAACCTCCACTCAATAGATCAACAAAAAGCAGTGAAGATCGCGCAATCCATAACGAAAAGAGATCAAGATCATCTGATAAGTCATCTAAGGATGTTGTAAAAGAATCAGAAGTCATTGGCAAACGTGTAAAATCGATGGACAGTCAAAGAGTTAAACAAattaatgataaaaatcttGATGCCACCACTGAAATCACTGATAAATCTGATAAGTCTAAAGTTACTAGCAAAGATACTACAACTGAAAAAACTTTCATGACTACTAAAGAAAAGAATCCCACCCCTGATTCTCCAAGACCTAAAAGAAAAACAGGTAAAAATACTGATGTCAATCATGGCAAAACTCCAAAATCTGACAAAGTTACTAACAAAGAAAAGATCTCCGAAAAAAGCAGTATTGCAAATGGTAACACAACTGTTGCGTTAGACAGTCAAAGACCTAAAAGAAATACTGAGACCTTAAAAACACCACCTAAAAAACCTGAAAGTAACAACAGAAACTCAGATTCTACTGCTAGTGCCAAGAAAACCCAAATTGCtggttcaaaaaataaaatttcagcaAAAGAAGATATAAACCAAGTAATTGTTAATTCCGAAACATTGATCTCTAATAACCAGAGACCTAAAAGgaataaagatataagcacTGATCATGTTAGAAGTATTGAAAAAAGCCctgtttctaataaaaaatctaaaaatatttctaatgGAAAGGATATTGATTTAGACGCCAGTCAAGTTAAAAATACATCTTTGGATAATAAAAGACGAACGAGGAATAATACCACCGATGTAACTATAAAAAAGAGTCCGAATACTAATGAGAAATcagaaaaaaatctaaacagTGATAATCAAAGGCCTATAAGAGTGAAACAGTCTTCTGCTCGCAAAGACCAACGCGTAGGCAATACAGAAGAAACGAAAGAATATGCAAAAACCGCTAAAGCGCTTtcatatacaaataaaatgccAGTATTCCAATGCAATGAATGTCATTCTCAGTTCACACTTCGAAGTGAAATCATCAAACATTTCGCGACTCACCACCAAAGTATGGAGAATAGTTTGGAACAAAATGGAGATTCAGTGGATTTTGTACATGATGACCCCATAATGCCCATTGTCATGGAGCTACTAAAATACAAGTGTGATTTATGCAAAACTGAATTCGAAGACCAGTTACTTTTGCTGAATCATTTAACAGAGAGCCACAGCTCGAGTGAAGTGAACGAAAAAAGTAAGCAAGTTTATAAATGCATCAAATGCGGCGCTGGATTCAGAGACAAGGATGCGCTGAATGAACACATGAATATTCATGTTGACAACAAGTGCTTTCTGTGTAATAAAACCTTTCGAGATGCAAAAGGACTAAGACTTCACAGGCTGAGagtacataacaaaaaagTATTCACGTGCGATAAGTGTAAATGTGAGTTTGCAAGTGAGCAGGACATGAATAAACATATTTGTGGAGTTTCTCCCGATATTCACAAAGATGACGGTGGTAACAGCGAAAGTCCAGTTCATATAAATAAAGAGAACGTAGATAACACAATTGAAGAGGAGAAACAGGCTAACCGACAAATTTTTGCGCGTATTAAAACAGGCGAACCTAAGCGTCTCTACAAATGCCTCAAATGTGATTTCAAATCTACAAACCGTACAATATTACTAACTCACATTCAACAAATACATAAAGTAGCaatcaataaagtttttaaatgcgaccAATGTAACGCGGCATTCAAAATGGCGGACAAGTTAAAACAGCATCTCGTTTTAAAACATTCGCGAACGGAAAAAAAGCTGCCAGTAATTcggataaaaaaatctaaactgTCAACTGTCACTTTGCAAAACGCGGGAAGGATAAATCTTCTGAACAGCCTAATATCGTCATCATTGAATAAGTCAATGCATAATTGCAAAATTTGCTTCTCTTACTTCCCTTCTCGTGAATTATTGCAGCGTCATATACAATGGGAGCATACGAAAAACGTTAATTTGCACAAGTGCGGACAATGCGGCCTGGTGCTGTACAGTGTTGAAGACCTAGAGATCCACATGCACAGCACTCATAGTTTAGATACTATAATTAAATGGAAAAAGCAGATAGCTAATACTTATGTTAAGCAAACTGATGTTTTTGATGGGGAATaa
Protein Sequence
MEQNIKSCPHCSEEFTNKTAWKDHMLKTHNILAYTCDLCPKTFFEQADFIHHFDFEHKSDFNRHVCSYCGVSYKWFKFLNKHIKDKHQIEKLMECNACGEEFYNSVAFKKHLRLKHSGGWKFHKCRKCHRSFTARELIVLHDKFDHSRNGDHHFREYAATHLTIEDEDLLENSKKCIKCNLEYTSSIYLMKHLKTTHNKHKYFRCCKCEDAFYNTRAGLSIHLYYEHGVPREHKCNKCRYGYSKAFVNKIRKNKENLTKDRLIDESEAVLPYWARDFVKEELPNSVDLVGATEQEIQNLCNNIKNLFHVLSTVPPSKLRGTTVVDPYLQFHSARKKLSDDLRRDCRRRDEKHFTNTNGTSEPTEIERPKRKLVFNKSTNEVSPAKRKRDEIPEAHLNANDPKVCEIRNLNTETRKPRQTKNSDDIAKEHNSGLSDDTSLQDHDNVKHSTEVKEKPPLNRSTKSSEDRAIHNEKRSRSSDKSSKDVVKESEVIGKRVKSMDSQRVKQINDKNLDATTEITDKSDKSKVTSKDTTTEKTFMTTKEKNPTPDSPRPKRKTGKNTDVNHGKTPKSDKVTNKEKISEKSSIANGNTTVALDSQRPKRNTETLKTPPKKPESNNRNSDSTASAKKTQIAGSKNKISAKEDINQVIVNSETLISNNQRPKRNKDISTDHVRSIEKSPVSNKKSKNISNGKDIDLDASQVKNTSLDNKRRTRNNTTDVTIKKSPNTNEKSEKNLNSDNQRPIRVKQSSARKDQRVGNTEETKEYAKTAKALSYTNKMPVFQCNECHSQFTLRSEIIKHFATHHQSMENSLEQNGDSVDFVHDDPIMPIVMELLKYKCDLCKTEFEDQLLLLNHLTESHSSSEVNEKSKQVYKCIKCGAGFRDKDALNEHMNIHVDNKCFLCNKTFRDAKGLRLHRLRVHNKKVFTCDKCKCEFASEQDMNKHICGVSPDIHKDDGGNSESPVHINKENVDNTIEEEKQANRQIFARIKTGEPKRLYKCLKCDFKSTNRTILLTHIQQIHKVAINKVFKCDQCNAAFKMADKLKQHLVLKHSRTEKKLPVIRIKKSKLSTVTLQNAGRINLLNSLISSSLNKSMHNCKICFSYFPSRELLQRHIQWEHTKNVNLHKCGQCGLVLYSVEDLEIHMHSTHSLDTIIKWKKQIANTYVKQTDVFDGE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-