Basic Information

Gene Symbol
-
Assembly
GCA_951802225.1
Location
OX637651.1:7841718-7865496[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.00013 0.0088 16.9 1.5 1 23 432 454 432 454 0.96
2 25 0.0028 0.19 12.7 0.4 1 21 460 480 460 482 0.94
3 25 0.0028 0.19 12.7 0.4 1 21 549 569 549 571 0.94
4 25 0.0028 0.19 12.7 0.4 1 21 574 594 574 596 0.94
5 25 0.0028 0.19 12.7 0.4 1 21 663 683 663 685 0.94
6 25 0.0028 0.19 12.7 0.4 1 21 688 708 688 710 0.94
7 25 0.0028 0.19 12.7 0.4 1 21 777 797 777 799 0.94
8 25 4.3e-05 0.003 18.4 4.6 1 23 825 847 825 847 0.98
9 25 0.00027 0.019 15.9 4.7 1 23 853 875 853 875 0.99
10 25 5.4e-05 0.0038 18.1 5.3 1 23 881 903 881 903 0.97
11 25 1e-05 0.00071 20.4 6.5 1 23 909 931 909 931 0.97
12 25 8.1e-06 0.00056 20.7 3.9 1 23 937 959 937 959 0.98
13 25 0.00015 0.01 16.7 6.7 1 23 965 987 965 987 0.97
14 25 2.9e-05 0.002 19.0 5.8 1 23 993 1015 993 1015 0.97
15 25 7.1e-07 5e-05 24.0 1.9 1 23 1021 1043 1021 1043 0.98
16 25 1.4e-05 0.00098 19.9 7.7 1 23 1049 1071 1049 1071 0.98
17 25 3.7e-05 0.0026 18.6 6.4 1 23 1077 1099 1077 1099 0.98
18 25 2.3e-05 0.0016 19.3 6.8 1 23 1105 1127 1105 1127 0.98
19 25 2.6e-06 0.00018 22.2 7.0 1 23 1133 1155 1133 1155 0.97
20 25 0.00013 0.0091 16.9 7.1 1 23 1161 1183 1161 1183 0.97
21 25 1.4e-06 9.7e-05 23.1 6.0 1 23 1189 1211 1189 1211 0.98
22 25 8.2e-05 0.0057 17.5 7.7 1 23 1217 1239 1217 1239 0.97
23 25 2.3e-06 0.00016 22.4 2.8 1 23 1245 1267 1245 1267 0.97
24 25 0.00039 0.027 15.4 0.8 1 23 1274 1296 1274 1296 0.97
25 25 0.009 0.63 11.1 4.8 1 23 1306 1328 1306 1328 0.99

Sequence Information

Coding Sequence
ATGAATCAGGAACACCATAATATCAACTCGGGTGGCGGCCAGCCCCCGGGCAGTGCAGAGCCTCAGAATCAAAGAGCCCAATCGTCACAGCACCAGCAGCACCAAGCAACTCTGACGCCCACATCTTCCGCAACTGACCTCAGGGTCAACTCTGCTGCGGTGAATGTTGCTTTGTCTAGTGTGGCAAAGTATTGGGTGTTCACAAACTTATTTCCGGGACCTATACCACAGGTGTCCGTTTACGGCCTCCCTCCTGGGGCTCGTTTAGAAAATGGAAAGCCGGTACAGGAGGCACTTGGCCAGCATGCCAGTCTAATAAATGGAGACCCCAACCTTATTCTGGGTCAGCATGTCGGAGGACAATCACAAGTTACAGTTTCTGGACCAAATGGCCAGCAGATTCCTGTAACACAGATTATTGCTACTCAAGCTCAGGAAGCATTGGCAGCTCAACAACAgcagcaacaacaacaacaacaccaGCAGCAGGAGCTGGCGCAGCAGGCCTCGGGCAGCTCAGCGCAGGTCTCAGTCAACACACACCAGCAGGTACCCAACTCGAGGGTGGAATTTATACAACATAACATTGATATGGGTCATCATTCTCAACAGCAGCACATGATGCAGCAGCAGCAGATCATGGGACGACCCGACCATGCAAATCAACAGATCCAGCTTACAGTAAGCGAAGATGGCATAGTGACAGTAGTGGAGCCGGGCAGCGGGAAGATGGTAGAAAAGGAGGACTTGCATGAAGCTATCAAGATGCCCGGAGAGCACACACTCACTGTCCACCAGCTGCAGCAGATTGTTGGACAACAGGTGATAGACAGCGTAGTGCGCATAGAGCAAGCGACGGGCGAGCCGGCCAACATCCTCGTGACGCAGAACCCGGACGGCACCACCTCCATCGAGGCCTCCGCCGCCGACCCGCTGCTCATCAAGGATGAGAAGCAGAAGATTGAATCTGCCCAGTTCGCTATACCGGCTGATATCAAGGATTTGAAGGGAGCTATTGATTTGAAGTCTGTAAGCAGCATAGGCATGGAGGGCGCGGTGGTGAAGAtctcgggcggcggcggcggggggggcgggggcgggggcgcggACGACCTGCACGCCATGTACAAGGTGAACGTGGAGGACCTGTCGCAGCTGCTCGCCTACCACGAGGTGTTCGGCAAGCTGGGCGCCGACGCGCAGCCGCCGCCGAACAACACCAAGCAACCGTGTGTGGAGCTAGAAGTGGAGGCGGGCACGAGCGCGCTGGGCGAGGACGCGGCGCCCGGCCACCACGCCTGCGACATCTGCGGGAAGATATTCCAGTTCCGCTACCAGCTCATTGTTCATAgACGCTACCACGGCGAGCGCAAGCCGTTCACGTGCCAGGTGTGCGGCGCCGCCTTCCCCAACCCCGTGCTGCTGTCGCGCCACGCCAAGTGCCACGTCGGTGAGTACACGGCAACACGCCCTTATAGTGTTCACGTGCCAGGTGTGCGGCGCCGCCTTCCCCAACCCCGTGCTGCTGTCGCGCCACGCCAAGTGCCACGTCGGTGTGCGGCGCCGCCTTCCCCAACCCCGTGCTGCTGTCGCGCCACGCCAAGTGCCACGTCGGTGAGTACACGGCAACACGCCCTTATAGTGTTCACGTGCCAGGTGTGCGGCGCCGCCTTCCCCAACCCCGTGCTGCTGTCGCGCCACGCCAAGTGCCACGTCGTGTTCACGTGCCAGGTGTGCGGCGCCGCCTTCCCCAACCCCGTGCTGCTGTCGCGCCACGCCAAGTGCCACGTCGGTGAGTACACGGCAACACGCCCTTATAGTGTTCACGTGCCAGGTGTGCGGCGCCGCCTTCCCCAACCCCGTGCTGCTGTCGCGCCACGCCAAGTGCCACGTCGGTGTGCGGCGCCGCCTTCCCCAACCCCGTGCTGCTGTCGCGCCACGCCAAGTGCCACGTCGGTGAGTACACGGCAACACGCCCTTATAGTGTTCACGTGCCAGGTGTGCGGCGCCGCCTTCCCCAACCCCGTGCTGCTGTCGCGCCACGCCAAGTGCCACGTCGTGTTCACGTGCCAGGTGTGCGGCGCCGCCTTCCCCAACCCCGTGCTGCTGTCGCGCCACGCCAAGTGCCACGTCGGTGAGTACACGGCAACACGCCCTTATAGTGTTCACGTGCCAGGTGTGCGGCGCCGCCTTCCCCAACCCCGTGCTGCTGTCGCGCCACGCCAAGTGCCACGTCGGTGTGCGGCGCCGCCTTCCCCAACCCCGTGCTGCTGTCGCGCCACGCCAAGTGCCACGTCGGTGAGTACACGGCAACACGCCCTTATAGTGTTCACGTGCCAGGTGTGCGGCGCCGCCTTCCCCAACCCCGTGCTGCTGTCGCGCCACGCCAAGTGCCACGTCGcgggcgcgggcggcgcggcgggggcggcgggcgcgggcgaggAGCGCAAGCGGCTGGTGCCGGACAAGCCGTACGCCTGCACCACGTGCCACAAGACCTTCGCGCGCAAGGAGCACCTCGACAACCACGTGCGCAGCCACACCGGGGAGACCCCCTACAGATGCCAGTTCTGCGCGAAGACGTTCACGCGCAAGGAGCACATGGTGAACCACGTGCGCAAGCACACGGGCGAGACGCCGCACCGCTGCGACATCTGCAAGAAGAGCTTCACGCGCAAGGAGCACTTCATGAACCACGTCATGTGGCACACAGGTGAAACGCCACACCATTGCGCGATATGCGGCAAGAAGTATACTAGGAAGGAACATTTAGAGAACCATATGCGCTCGCATACGAACGACTCTGCGTTCAAATGCGATTTGTGCTCCAAGTCCTTTACAAGAAAGGAACACTTCAACAATCACATTATGTGGCATACCGGCGAGACTCCCCACCGGTGCGATTTCTGTTCGAAAACGTTCACTCGTAAAGAGCACCTACTAAACCACGTGCGACAACATACAGGCGAGTCGCCGCACCGCTGCGACTACTGCTCCAAGTCCTTCACGCGGCGGGAACACCTCGTGAACCACGTGCGCCAGCACACCGGCGAGACGCCCTTCCAGTGCGGCTACTGCCCCAAGGCCTTCACGCGCAAGGACCACCTCGTAAACCACGTGCGGCAACACACCGGGGAGTCCCCACACAAATGCTCCTACTGCACTAAATCGTTTACTCGCAAGGAGCATCTCACGAACCACGTGCGGCAGCACACGGGAGAGTCGCCGCATCGGTGCACGTACTGCGCCAAGTCCTTTACTAGGAAGGAGCATCTGAATAACCATGTTAGGCAGCACACAGGCGAGACACCCCACAAGTGCACTTTTTGTACGAAGGCGTTCTCAAGGAAGGAACACCTGAACAACCACATCCGGCAGCACACGGGCGACATGCCGCACTCCTGCTCCTACTGCAACAAGAGCTTCACGAGAAAAGAACATCTTACCAACCATATTAGACAGCACACGGGCGAGACGCCGTTCAAGTGCACGTATTGCGCGAAGTCGTTCTCGCGCAAGGAGCACCTCACCAACCACACGCACCTGCACACGGGCGAGACGCCGCACAAGTGTCCCTTCTGTACCAAGACCTTCTCCCGCAAGGAGCATCTCACTAACCATATCAGAATCCACACGGGCGAATCGCCGCATCGTTGCGAGTTCTGCCAGAAGACATTTACAAGAAAAGAACATCTGAACAATCATCTGAAGCAGCACACCGGGGACACTCCGCACATGTGCAAAGTTTGCTCCAAGCCGTTCACTAGGAAAGAGCACCTTATTGCTCACATGAGAGCGCATACCTGCGGTGAACGGCCGTACAGCTGTAACCAGTGCGGGAAATCGTTCCCTCTGAAAGGAAACCTGATGTTCCACGAGCGGTCGCACTTCAAGTCCGGCGCCGGCGCGCGACCGTTCAAGTGCGACGTTTGTTCAAAAGCTTTTATGTGCAAAGGGCACCTGGCGTCGCACCGGCGCACGCACGCGGGCGCGGCggaggcgggcgcgggcgcgggcgcgggggagGCGGCGCCGGCCGAGGGCGAGGACTGCACCGCCGCCTGCACCAAGTGCGAGCCGGCCGACgacgcgcccgcgccgccgccgccgccgccgccgccgccgccgccgctgcagGACATGAAGATTGAAAGAAACTCAACAGAGAGTAGACCATCCGAAGCTGTCATTGTAACACAAAATCCGAGTAGTCAAACAGTAATGCAGATTACTAGCCAGCAGGTCCGCGGCGACGGCGCCGGCGCGGCGGGCTACGCGCACGCGCACGCGCCCGCCCTCGCGCACCTCCCCGTCACCGTCAACTACTAG
Protein Sequence
MNQEHHNINSGGGQPPGSAEPQNQRAQSSQHQQHQATLTPTSSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPPGARLENGKPVQEALGQHASLINGDPNLILGQHVGGQSQVTVSGPNGQQIPVTQIIATQAQEALAAQQQQQQQQQHQQQELAQQASGSSAQVSVNTHQQVPNSRVEFIQHNIDMGHHSQQQHMMQQQQIMGRPDHANQQIQLTVSEDGIVTVVEPGSGKMVEKEDLHEAIKMPGEHTLTVHQLQQIVGQQVIDSVVRIEQATGEPANILVTQNPDGTTSIEASAADPLLIKDEKQKIESAQFAIPADIKDLKGAIDLKSVSSIGMEGAVVKISGGGGGGGGGGGADDLHAMYKVNVEDLSQLLAYHEVFGKLGADAQPPPNNTKQPCVELEVEAGTSALGEDAAPGHHACDICGKIFQFRYQLIVHRRYHGERKPFTCQVCGAAFPNPVLLSRHAKCHVGEYTATRPYSVHVPGVRRRLPQPRAAVAPRQVPRRCAAPPSPTPCCCRATPSATSVSTRQHALIVFTCQVCGAAFPNPVLLSRHAKCHVVFTCQVCGAAFPNPVLLSRHAKCHVGEYTATRPYSVHVPGVRRRLPQPRAAVAPRQVPRRCAAPPSPTPCCCRATPSATSVSTRQHALIVFTCQVCGAAFPNPVLLSRHAKCHVVFTCQVCGAAFPNPVLLSRHAKCHVGEYTATRPYSVHVPGVRRRLPQPRAAVAPRQVPRRCAAPPSPTPCCCRATPSATSVSTRQHALIVFTCQVCGAAFPNPVLLSRHAKCHVAGAGGAAGAAGAGEERKRLVPDKPYACTTCHKTFARKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCAICGKKYTRKEHLENHMRSHTNDSAFKCDLCSKSFTRKEHFNNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCDYCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSYCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLNNHVRQHTGETPHKCTFCTKAFSRKEHLNNHIRQHTGDMPHSCSYCNKSFTRKEHLTNHIRQHTGETPFKCTYCAKSFSRKEHLTNHTHLHTGETPHKCPFCTKTFSRKEHLTNHIRIHTGESPHRCEFCQKTFTRKEHLNNHLKQHTGDTPHMCKVCSKPFTRKEHLIAHMRAHTCGERPYSCNQCGKSFPLKGNLMFHERSHFKSGAGARPFKCDVCSKAFMCKGHLASHRRTHAGAAEAGAGAGAGEAAPAEGEDCTAACTKCEPADDAPAPPPPPPPPPPPLQDMKIERNSTESRPSEAVIVTQNPSSQTVMQITSQQVRGDGAGAAGYAHAHAPALAHLPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-