Basic Information

Gene Symbol
-
Assembly
GCA_951802225.1
Location
OX637668.1:1722685-1724253[-]

Transcription Factor Domain

TF Family
zf-BED
Domain
zf-BED domain
PFAM
PF02892
TF Group
Zinc-Coordinating Group
Description
The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.00073 1.5 9.3 1.9 13 43 51 78 45 79 0.88
2 14 0.0047 10 6.7 2.5 14 44 82 109 77 109 0.89
3 14 0.00046 0.98 10.0 0.3 3 29 100 126 98 138 0.83
4 14 1.3e-05 0.027 15.0 1.2 5 31 136 158 131 168 0.71
5 14 0.00018 0.38 11.3 1.4 9 44 168 198 160 198 0.83
6 14 5.3e-05 0.11 13.0 1.9 14 44 201 228 195 228 0.85
7 14 7.1e-05 0.15 12.6 0.5 14 44 231 258 229 258 0.92
8 14 1.1 2.3e+03 -0.8 0.1 17 29 272 284 263 288 0.79
9 14 0.00044 0.94 10.0 1.3 4 43 289 325 286 326 0.91
10 14 0.028 59 4.3 1.0 8 43 322 354 318 355 0.78
11 14 0.44 9.3e+02 0.4 2.0 18 27 362 371 354 385 0.76
12 14 0.0062 13 6.4 0.8 6 29 379 402 374 408 0.87
13 14 1.2 2.5e+03 -0.9 3.6 12 28 413 429 402 442 0.76
14 14 0.2 4.2e+02 1.5 2.5 14 43 443 469 425 470 0.78

Sequence Information

Coding Sequence
ATGAATGTTGAACAAACACAAGAACAATACATAGAAAACGCTGATATAGTACAAGTTAAAATTGAACAAGTaaacgatgatgatgatgaatacaACTTTTACAACAATCCTCAAGAAAGTGAACAAGACAACAGCTTTAATTATGATTCAAATGAAAATAGAATAACGTGTACTCAATGCGAAACAACATTCAAAAGCAAGTCCTCGCTAAAAAAGCATTTAGAAAACCTACATTCAAGCGTAGAACAAAACATTGAATGTTCAATATGCAACCGTCCAATGAGAAACAAGTACCAGCTTTGGTCTCATATGAATTCAGTGCATCGGGAAGACAGTGACGCTTTCTGTGAAACATGTGGCAAACAGTTCCCAAGCAAGCGTAAACTTAACAACCATGTTTACTATTCCCATCCCGACTCCAGCGAGAGTGTTCAATGCAATATTTGtaataagatttttaaaagcaaaaatagTCTCAAAGTTCACACGAGGCTGGTCCATCCATCTGAAGACAGCTCTGTCCAGTGCCCCCATTGtaacaaaacatttaaaatagaaaTGCTACTGCAAAGGCATATAAAATGGAACCATCCTGTAGATGGCATGTCATACAAATGTAGCATATGTCAGAAAGTACTTCCCTCTATGACGTGTCTGAAGCAGCACTTGGACAATGTTCACAAGAGCGTAGAAGAGATGGTGACATGCGAAATATGTCAGAAAATGTTCAAAACTGACAAGAATTTAAAGGTTCACATGAAGCAGATTCACAGCGGTCAGAGAGTTGAGAAAAAAGAGTACAAAGAAGGAGATTTTGCATGCCCAGAATGTGACAAAAAGTATTCTACCAAAACAGCCTTGGATTGGCATTACGAGCGGTACCACTCTGATAACAGACGCACCACAACTTGTGGCATATGTCAGAAAGACCTGTCAGATTACGCTAGCCTAAAAAGACACATTGATACAGTCCATGCGCAAGGCCTTACCAGTACCTGCGTGTTATGTCAGAAGGATTTTAAATCCCCAATGAATTTGGCTAGGCATATAAAAGTGACGCACGCCCCGCCAGAAGCGGCGGAAACATGTGATATATGTCAGAAAACTTTTAAATGCGTAATGCATTTGAGGATTCACGTCAACGCTGTTCATTCAAAGGAAGGAATAAGCAAATGCGACGTATGTCAAAAAGAGTTCTCAAGTAAAAAATACATGGTAAAGCACAAAAAGATACATGTCAAGGAACGGCAGTACCAATGTTCGATCTGTCAGAAATATTTCAAGTCGGCGGACGATGTGAGAAAGCATAAAAAGCGCGTTCACAACAAGGATATTTACAGGTGCAATAAGTGCGATCTCAACTTTGCGAACCAGGAGGAAATGTCTACTCACATGAAGGAGGTGCACTATTCAGCGGCTTTGCCGACTTGTGCTAGATGCGGTGTTATGTTTGAGAACGAGGCAGTTTTGCAGAGGCACGCTTTAGTGTGTGATGCTCCTGAAATGCCATTGGCTTTTGTGAAAGTAGAAATGGAGGACGTTAATGAAGATGAAGAATCAGTTTCGTGA
Protein Sequence
MNVEQTQEQYIENADIVQVKIEQVNDDDDEYNFYNNPQESEQDNSFNYDSNENRITCTQCETTFKSKSSLKKHLENLHSSVEQNIECSICNRPMRNKYQLWSHMNSVHREDSDAFCETCGKQFPSKRKLNNHVYYSHPDSSESVQCNICNKIFKSKNSLKVHTRLVHPSEDSSVQCPHCNKTFKIEMLLQRHIKWNHPVDGMSYKCSICQKVLPSMTCLKQHLDNVHKSVEEMVTCEICQKMFKTDKNLKVHMKQIHSGQRVEKKEYKEGDFACPECDKKYSTKTALDWHYERYHSDNRRTTTCGICQKDLSDYASLKRHIDTVHAQGLTSTCVLCQKDFKSPMNLARHIKVTHAPPEAAETCDICQKTFKCVMHLRIHVNAVHSKEGISKCDVCQKEFSSKKYMVKHKKIHVKERQYQCSICQKYFKSADDVRKHKKRVHNKDIYRCNKCDLNFANQEEMSTHMKEVHYSAALPTCARCGVMFENEAVLQRHALVCDAPEMPLAFVKVEMEDVNEDEESVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00715960;
90% Identity
iTF_00715960;
80% Identity
iTF_00715960;