Basic Information

Gene Symbol
SMARCC2
Assembly
GCA_951802225.1
Location
OX637660.1:4158317-4181031[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 1.2e-13 1.4e-10 41.6 0.0 3 44 532 573 530 575 0.95
2 18 0.097 1.2e+02 3.4 0.0 29 44 596 611 594 613 0.89
3 18 0.097 1.2e+02 3.4 0.0 29 44 674 689 672 691 0.89
4 18 0.097 1.2e+02 3.4 0.0 29 44 716 731 714 733 0.89
5 18 0.097 1.2e+02 3.4 0.0 29 44 756 771 754 773 0.89
6 18 0.097 1.2e+02 3.4 0.0 29 44 796 811 794 813 0.89
7 18 0.097 1.2e+02 3.4 0.0 29 44 910 925 908 927 0.89
8 18 0.097 1.2e+02 3.4 0.0 29 44 948 963 946 965 0.89
9 18 0.097 1.2e+02 3.4 0.0 29 44 1074 1089 1072 1091 0.89
10 18 0.097 1.2e+02 3.4 0.0 29 44 1112 1127 1110 1129 0.89
11 18 0.097 1.2e+02 3.4 0.0 29 44 1150 1165 1148 1167 0.89
12 18 0.097 1.2e+02 3.4 0.0 29 44 1190 1205 1188 1207 0.89
13 18 0.097 1.2e+02 3.4 0.0 29 44 1234 1249 1232 1251 0.89
14 18 0.097 1.2e+02 3.4 0.0 29 44 1272 1287 1270 1289 0.89
15 18 0.097 1.2e+02 3.4 0.0 29 44 1346 1361 1344 1363 0.89
16 18 0.097 1.2e+02 3.4 0.0 29 44 1468 1483 1466 1485 0.89
17 18 0.097 1.2e+02 3.4 0.0 29 44 1506 1521 1504 1523 0.89
18 18 0.097 1.2e+02 3.4 0.0 29 44 1544 1559 1542 1561 0.89

Sequence Information

Coding Sequence
ATGAAGGTGTTCATGGACATGAAGCCGGGCGGCGCTCTGTGCACGCTGCTCGCCACCATGTTCCGCTTCAAGTCGGAGCAGCGGTGGCGCAAGTTCGACTTCCAGGTCGGTAAGAACCCCTCCCGCAAGGACCTGAACGTCCAGATGATGATGGAGATAGAGTCCGCCCTGCTGCAGGCGGAGGCGATCAGGTTCCCCTGCGTCTTCATCAGGCCGGAGGTGGACAAGGCCACCGCCAACAAGGTCAAGGACATCATTGTCAACCACCAGGGAGAGATTTGCGAGGAGGAGGACGAGGCGACGCACATCATCTACCCCGCAGTGGACCCGCTGGACGAGGAGTACGCGCGGCCCGTGTTCCGCCGCGGCGGCCACGTGCTCGTGCACTGGTACTACTTCCCCGACAGCCACGACACCTGGGCGCAGGCTGATCTGccgGTGGACGTCCCGGAGAGCGTGAACTGGGAGCGGCCCGGGCCGTGGCGCGTGACGAGCACGTGGGCGCTGGACCTGCCGCAGTACAACGAGTGGATGACCGAGGAGGACTACGAGGTCGACGCCAACGGGAAGAAGAAGGTGCACAAGCTGCGGCTGTCGGTGGACGAGCTGCTGCCGGGCGCGGAGCCGGCCGTGCGCGGCAAGAAGGGCAAGAGGAAGCGCTCGCCCTCGCCGCCGCCGAACAAGAACAAGCGCAAGAGCCGCATCGTGAAGCGCGGGCGCGACAACGACGGCGACGAGGAAGAGGACGCGGCGTCGCGCGACAACAGCGACGTCCCGCCCGCGCCCGAGCCCGACAAGCCCGCCGACACCCCGACCCCGTCGACGTCGGCGTCCCCCCCGCCCGCggcccccgcccccgcgccgGAGCCCCCCTccacgcccgcgcccgcccccgcgccgcccTCCAGTGATGCCCAGGACGACTCGCAGGGAAAGAGCGATACCAACACTCAGGAGGCAACAAGCAAGGAGGAGATGGAAGACAACGTGACGGACCAGACGCACCACATCATCATTCCCTCGTACTCGGCGTGGTTCGACTACAACTCCATACATATGATAGAGAAGCGCGCGCTGCCGGAGTTCTTCAACGGCAAGAACAAGAGCAAGACGCCGGAGATCTATCTGGCTTACAGGAACTTCATGATAGACACGTACCGCCTGAACCCTACGGAGTACCTGACGAGCACGGCCTGCCGCCGCAACCTGGCCGGCGACGTGTGCGCCATCATGCGCGTGCACGGGCTGCTCGAGCAGTGGGGGCTCATCAACTACCAGCTGGACGCGGAGTCCCGGCCGACGGCCATGGGCCCGCCGTCCACCTCGCACTTCCACGTGCTGTCCGACACGCCCTCCGGCCTGCAGCCGCTCGTGCGCGCCGCCACCCGCCcagTGGAAAATGCAGCCGTGCCTAAACTGGAAGCAGGGCTACCAAACGGCGCCGAGGCGGGCGCTCCGCCGCCGGCCGGCGCTCCGGGGGCTCCGGCGGCCGGCCTGCCAGCGCCCACTATCAAGGCGGAACAAACGCTCGAAATGGGAGGAGCTCCGGGACTGAAACTGGACCAGTaccgcggcgccggcgcccgcgggcGCGACTGGACGGACCAGGAgacgctgctgctgctggaGGCGCTGGAGCTGCACCGCGACGACTGGAACAGGGTGGCCGCGCACGTGGGCTCGCGCAGCCAGGACGAGTGCGTGCTGCACTTCCTGCGTCTGCCCATCGAGGAGCCCTACCTGCAGCCCGCGCcaggtcacacacacacacacacacacaccgcgCACGTGGGCTCGCGCAGCCAGGACGAGTGCGTGCTGCACTTCCTGCGCCTGCCCATCGAGGAGCCCTACCTGCAGCCCGCGCcaggtcacacacacacacacacacacacacaccgcgCACGTGGGCTCGCGCAGCCAGGACGAGTGCGTGCTGCACTTCCTGCGCCTGCCCATCGAGGAGCCCTACCTGCAGCCCGCGCcaggtcacacacacacacacacacacacaccgcgCACGTGGGCTCGCGCAGCCAGGACGAGTGCGTGCTGCACTTCCTGCGCCTGCCCATCGAGGAGCCCTACCTGCAGCCCGCGCcagCCCGCGCcaggtcacacacacacacacacacacacaccgcgCACGTGGGCTCGCGCAGCCAGGACGAGTGCGTGCTGCACTTCCTGCGCCTGCCCATCGAGGAGCCCTACCTGCAGCCCGCGCcaggtcacacacacacacacacacacacacacaccgcgCACGTGGGCTCGCGCAGCCAGGACGAGTGCGTGCTGCACTTCCTGCGCCTGCCCATCGAGGAGCCCTACCTGCAGCCCGCGCcaggtcacacacacacacacacacacacacacaccgcgCACGTGGGCTCGCGCAGCCAGGACGAGTGCGTGCTGCACTTCCTGCGCCTGCCCATCGAGGAGCCCTACCTGCAGCCCGCGCcaggtcacacacacacacacacaccgcgCACGTGGGCTCGCGCAGCCAGGACGAGTGCGTGCTGCACTTCCTGCGCCTGCCCATCGAGGAGCCCTACCTGCAGCCCGCGCcaggtcacacacacacacacacaccgcgCACGTGGGCTCGCGCAGCCAGGACGAGTGCGTGCTGCACTTCCTGCGCCTGCCCATCGAGGAGCCCTACCTGCAGCCCGCGCcaggtcacacacacacacacacacacacacacacaccgcgCACGTGGGCTCGCGCAGCCAGGACGAGTGCGTGCTGCACTTCCTGCGCCTGCCCATCGAGGAGCCCTACCTGCAGCCCGCGCcaggtcacacacacacacacacacacaccgcgCACGTGGGCTCGCGCAGCCAGGACGAATGCGTGCTGCACTTCCTGCGTCTGCCCATCGAGGAGCCCTACCTGCAGCCCGCGCcaggtcacacacacacacacacacacacaccgcgCACGTGGGCTCGCGCAGCCAGGACGAATGCGTGCTGCACTTCCTGCGTCTGCCCATCGAGGAGCCCTACCTGCAGCCCGCGCcaggtcacacacacacacacacacacacacacaccgcgCACGTGGGCTCGCGCAGCCAGGACGAGTGCGTGCTGCACTTCCTGCGCCTGCCCATCGAGGAGCCCTACCTGCAGCCCGCGCcaggtcacacacacacacacacacacacacacacacacacacacacacacacacaccgcgCACGTGGGCTCGCGCAGCCAGGACGAGTGCGTGCTGCACTTCCTGCGTCTGCCCATCGAGGAGCCCTACCTGCAGCCCGCGCcaggtcacacacacacacacacacacaccgcgCACGTGGGCTCGCGCAGCCAGGACGAATGCGTGCTGCACTTCCTGCGTCTGCCCATCGAGGAGCCCTACCTGCAGCCCGCGCcaggtcacacacacacacacacacacaccgcgCACGTGGGCTCGCGCAGCCAGGACGAATGCGTGCTGCACTTCCTGCGTCTGCCCATCGAGGAGCCCTACCTGCAGCCCGCGCcaggtcacacacacacacacacacacacacacaccgcgCACGTGGGCTCGCGCAGCCAGGACGAGTGCGTGCTGCACTTCCTGCGCCTGCCCATCGAGGAGCCCTACCTGCAGCCCGCGCcagCCCGCGCcaggtcacacacacacacacacacacacacacacaccgcgCACGTGGGCTCGCGCAGCCAGGACGAGTGCGTGCTGCACTTCCTGCGTCTGCCCATCGAGGAGCCCTACCTGCAGCCCGCGCcaggtcacacacacacacacacacacaccgcgCACGTGGGCTCGCGCAGCCAGGACGAATGCGTGCTGCACTTCCTGCGTCTGCCGATCGAGGAGCCCTACCTGCAGCCCGCGCcaggtcacacacacacacaccgcgCACGTGGGCTCGCGCAGCCAGGACGAATGCGTGCTGCACTTCCTGCGTCTGCCCATCGAGGAGCCCTACCTGCAGCCCGCGCcaggtcacacacacacacacacacacacaccgcgCACGTGGGCTCGCGCAGCCAGGACGAGTGCGTGCTGCACTTCCTGCGCCTGCCCATCGAGGAGCCCTACCTGCAGCCCGCGCcaggtcacacacacacacacacacacacacacacaccgcgCACGTGGGCTCGCGCAGCCAGGACGAGTGCGTGCTGCACTTCCTGCGTCTGCCCATCGAGGAGCCCTACCTGCAGCCCGCGCcaggtcacacacacacacacacacacacaccgcgCACGTGGGCTCGCGCAGCCAGGACGAGTGCGTGCTGCACTTCCTGCGTCTGCCCATCGAGGAGCCCTACCTGCAGCCCGCGCcaggtcacacacacacacacacacacacacacacacacacaccgcgCACGTGGGCTCGCGCAGCCAGGACGAGTGCGTGCTGCACTTCCTGCGTCTGCCCATCGAGGAGCCCTACCTGCAGCCCGCGCcaggtcacacacacacacacacacacaccgcgCACGTGGGCTCGCGCAGCCAGGACGAATGCGTGCTGCACTTCCTGCGTCTGCCGATCGAGGAGCCCTACCTGCAGCCCGCGCcaggtcacacacacacacacacacacaccgcgCACGTGGGCTCGCGCAGCCAGGACGAGTGCGTGCTGCACTTCCTGCGTCTGCCCATCGAGGAGCCCTACCTGCAGCCCGCGCCAGACGGCGTGCTGGGCCCGCTGGCCTACCAGCCGGTGCCGTTCAGCAAGCAGGGCAACCCGGTGATGAGCACCGTGGCCTTCCTCGCCTCCGTCGTCGACCCGCGCATCGCCGCCAGGGCCGTCTCCGCCGCCATGGACGAGTTTGCTGCTATCAAGGACGAGGTGCCGGCAGCGATGATGGAGGCGCACGTGAAGGCGGCGAGCGCGCTGGGCGGCGCGGGGCCGGCCGCCGCGCTGGCCGCCACCGGCATCGCCGGCACCGCGcccgacacgccgccgcctgCAGAGAAGAAGGAGGGCGATGTAAAAGTGGAGGCTATGGAAGTGGAAGAGGGCGAGCCCAAGCGGGAGCCCAAGGAGGAGCCCGCCGACGCCGACGACAAGGACGCCGCGCCGCCGGCCGCTGACAATGAGGCGACCTGCGTAGACGCCAAGCTGCAGtccgcggcggcgggcgcgctggcggcggcggcggtgaaGGCCAAGCACCTGGCCGGAGTGGAGGAGAGGAAGATCAAGTCGCTGGTGGCGCTGCTCGTGGAGACGCAGATGAAGAAGCTCGAGATCAAGCTCCGACACTTCGAGGAGCTGGAGGCCACTATGGAGCGGGAGAGGGAAGGGCTGGAGTACCAGCGGCAGCAGCTGATCCAGGAGCGGCAGCAGTTCCACCTGGAGCAGCTGAAGGCGGCCGAGTTCCGCGCGCGCCACCAGGCGCACCACAGACTGCAGCAagagggcgcggcggcgccggcGACCGTGGCCGACGCGCCCGCcgagcccgcgcccgcgcccgcgcccgcgcacgCCTAG
Protein Sequence
MKVFMDMKPGGALCTLLATMFRFKSEQRWRKFDFQVGKNPSRKDLNVQMMMEIESALLQAEAIRFPCVFIRPEVDKATANKVKDIIVNHQGEICEEEDEATHIIYPAVDPLDEEYARPVFRRGGHVLVHWYYFPDSHDTWAQADLPVDVPESVNWERPGPWRVTSTWALDLPQYNEWMTEEDYEVDANGKKKVHKLRLSVDELLPGAEPAVRGKKGKRKRSPSPPPNKNKRKSRIVKRGRDNDGDEEEDAASRDNSDVPPAPEPDKPADTPTPSTSASPPPAAPAPAPEPPSTPAPAPAPPSSDAQDDSQGKSDTNTQEATSKEEMEDNVTDQTHHIIIPSYSAWFDYNSIHMIEKRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPTEYLTSTACRRNLAGDVCAIMRVHGLLEQWGLINYQLDAESRPTAMGPPSTSHFHVLSDTPSGLQPLVRAATRPVENAAVPKLEAGLPNGAEAGAPPPAGAPGAPAAGLPAPTIKAEQTLEMGGAPGLKLDQYRGAGARGRDWTDQETLLLLEALELHRDDWNRVAAHVGSRSQDECVLHFLRLPIEEPYLQPAPGHTHTHTHTAHVGSRSQDECVLHFLRLPIEEPYLQPAPGHTHTHTHTHRARGLAQPGRVRAALPAPAHRGALPAARARSHTHTHTHTAHVGSRSQDECVLHFLRLPIEEPYLQPAPARARSHTHTHTHTAHVGSRSQDECVLHFLRLPIEEPYLQPAPGHTHTHTHTHTAHVGSRSQDECVLHFLRLPIEEPYLQPAPGHTHTHTHTHTAHVGSRSQDECVLHFLRLPIEEPYLQPAPGHTHTHTPRTWARAARTSACCTSCACPSRSPTCSPRQVTHTHTHRARGLAQPGRVRAALPAPAHRGALPAARARSHTHTHTHTHTAHVGSRSQDECVLHFLRLPIEEPYLQPAPGHTHTHTHTAHVGSRSQDECVLHFLRLPIEEPYLQPAPGHTHTHTHTPRTWARAARTNACCTSCVCPSRSPTCSPRQVTHTHTHTHTPRTWARAARTSACCTSCACPSRSPTCSPRQVTHTHTHTHTHTHTHTHTAHVGSRSQDECVLHFLRLPIEEPYLQPAPGHTHTHTHTAHVGSRSQDECVLHFLRLPIEEPYLQPAPGHTHTHTHTAHVGSRSQDECVLHFLRLPIEEPYLQPAPGHTHTHTHTHTAHVGSRSQDECVLHFLRLPIEEPYLQPAPARARSHTHTHTHTHTAHVGSRSQDECVLHFLRLPIEEPYLQPAPGHTHTHTHTAHVGSRSQDECVLHFLRLPIEEPYLQPAPGHTHTHRARGLAQPGRMRAALPASAHRGALPAARARSHTHTHTHTAHVGSRSQDECVLHFLRLPIEEPYLQPAPGHTHTHTHTHTPRTWARAARTSACCTSCVCPSRSPTCSPRQVTHTHTHTHRARGLAQPGRVRAALPASAHRGALPAARARSHTHTHTHTHTHTAHVGSRSQDECVLHFLRLPIEEPYLQPAPGHTHTHTHTAHVGSRSQDECVLHFLRLPIEEPYLQPAPGHTHTHTHTAHVGSRSQDECVLHFLRLPIEEPYLQPAPDGVLGPLAYQPVPFSKQGNPVMSTVAFLASVVDPRIAARAVSAAMDEFAAIKDEVPAAMMEAHVKAASALGGAGPAAALAATGIAGTAPDTPPPAEKKEGDVKVEAMEVEEGEPKREPKEEPADADDKDAAPPAADNEATCVDAKLQSAAAGALAAAAVKAKHLAGVEERKIKSLVALLVETQMKKLEIKLRHFEELEATMEREREGLEYQRQQLIQERQQFHLEQLKAAEFRARHQAHHRLQQEGAAAPATVADAPAEPAPAPAPAHA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-