Eher042557.1
Basic Information
- Insect
- Euschistus heros
- Gene Symbol
- -
- Assembly
- GCA_003667255.1
- Location
- RCWM01000088.1:504181-521062[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.093 59 7.1 4.1 1 23 48 71 48 71 0.97 2 18 0.93 5.9e+02 4.0 5.0 1 23 78 101 78 101 0.87 3 18 8.8 5.6e+03 0.9 3.0 3 23 109 130 109 130 0.93 4 18 0.0055 3.5 11.0 2.7 1 23 195 218 195 218 0.98 5 18 2.4 1.5e+03 2.6 2.3 2 23 226 248 225 248 0.93 6 18 0.17 1.1e+02 6.3 1.6 1 23 312 335 312 335 0.91 7 18 0.0038 2.4 11.5 1.1 2 23 353 375 352 375 0.95 8 18 0.076 48 7.4 0.3 1 23 381 404 381 404 0.97 9 18 0.014 9.1 9.7 2.2 2 23 441 462 440 462 0.94 10 18 0.0034 2.2 11.6 2.8 1 21 468 488 468 491 0.95 11 18 0.033 21 8.5 3.5 1 23 496 519 496 519 0.95 12 18 0.69 4.4e+02 4.4 3.8 1 23 525 548 525 548 0.92 13 18 0.0085 5.4 10.4 1.4 1 23 554 577 554 577 0.95 14 18 0.00025 0.16 15.2 2.1 1 23 583 606 583 606 0.97 15 18 0.00013 0.085 16.0 2.3 1 23 612 635 612 635 0.97 16 18 5.9e-05 0.037 17.2 2.0 1 23 641 664 641 664 0.98 17 18 0.052 33 7.9 1.1 2 23 671 693 671 693 0.97 18 18 0.023 15 9.0 1.7 1 23 699 722 699 722 0.96
Sequence Information
- Coding Sequence
- ATGGAAGGAGAATTGGAAATCAAGGAAGAACCAGAAGATGAAGAATCCTCTCGAAAAACAGAAGTCACTATAAAAAGTGAACCAGATGAAATTGAACCAGGCATCAATTCATTACATCAAGGTGATACAACTATTGCCCCATATAAATGTCACCATTGTGGATTGGAGTGGGATAAGTTCAGTGATATTAGAAAACATATTAAATCTAAGCACATTAAGAAAAAGTCTAAGTACAAATGCCACTACTGCTCCTTTAAGGGAAATTtactaattcatttaaaaaaacatgtaacgGAGAAGCATTCAGATGCAGCATTGCTATGGTGCCCATATTGTTACTACCAGACCTGCATTCCCTATTGCTTAAGGTACCATGTTATCAACAAGCACCTTAAGGGAAATTctCAACATACTATTGGTGCAgaacatttattacatttacagAAAATTGATTCTATTCAAAATCAAAACCATCAAAAGTCTACACGTgAAGACGATGTGGCCGAGTCTGTGAAAAATGAACCTTTGGACTTTGAATCCAATAATGACTTACCATTTCACGGTAATGAAActtctaCACCATATAAATGTTATCACTGTGGAATAGAGCGGGAAAAGTTTGGTGATCTCAGAAAACATATAAAGTCTAAACATGTTGTGAAATTACTGAAGCAGCAATGCCCATACTGCTGCTTCAAGGGGACCTTTCTGCAAGAgctaaaaaatcatataaaagaaaatcacCCAAATGAAAGAATATTATGGTGCCCATATTGCTATTATCAAACCTCTATTCCATACTGCTTGAGGTTTCATGTTATCAAAAAGCATATCAAAAGAAATGctAAACATAAGGTTGGAGCAAAACTTTGtcgtgatttaaaaaaaatgacttataATTTTACCTCAAAATTGCCTAATGGTATCCATTCATATGAGTGTTTTCATTGCCACAAGAGTTGGCAAGATCTTGATGTGTTGAAATCCCACATTGATCTCATCCACATAAAAAATTTTGctcaaaaaagaaaactgacAAAAAAAGATCGACCTAATAAATGCCCATACTGCAGTTATAGGACAGCACAAGGAGATTATTTGAAGCACCACATCAATGCCAAGCATACCAAAGCTGCTGTGTATCCATGTCCATTTTGTCCATACATCGCTTATATGAAAAACTCACTCTCATACCACTTAAAAGTCAAACACACTGACATAAACCAAAAACTTTGCTGCCCACATTGTGATTTCACCGCCTTTACTGGTACAATTCTGAAATATCACATAATTGGTGAACATACAAAGGACAAACACCTTTCATgccctcattgtgactataaatcATTCAGACCCTACCTATTAAGATTTCACATGTTAAAACataccaaagaaaaaaattatccatgTCAAGAATGCGATTACAAGGCATCACGCCCTGAGCTATTGAAACATCATATTAAATGTAAACATAATCCCGaaaagtttaaatgtaaattttgtgattttaaagCTCCCCAATATTCCCAACTTAAAATGCATCTTCACCTGAACCACAAGGATGAACTTATGCACAAGTGCCCACAATGTGATTACAAAGCTGCTAGGGCCTTTACCTTAAAATGTCACTTGCAATTGAAGCATAACAgtgataaaaaattttcatgtgatcagtgcaattataaaaCATCGTTGTCTTATAAATTAAAGCTTCACATTGATATTAAACATTGTAAAGAAAAGCTTCATAAATGCCCACACTGCAGTTATGCTGTAGCTCAAgctttctctttaaaaaatcacaTCAAAATCAAACATGATAGAGAGAAGCCCCATCAATGCCCATCCTGTGATTATCGGTGTGCATCAGCTTCTTATCTGCTTTCTCATATCAGGGTAAAGCATACAAAGGAAAAGATTTTCAAGTGTGAGTATTGCGATTATACCTCAGGGTCGAACAGTAGTCTTAAATATCATATTAAATCGAAACACCTAAGAGACAGTTTCCGTCAGTGCCCCCATTGTGAGTATAGTGCTCTCACTACCAGTGCTTACAATCGCCACATTAAGCGGTTGCACAGTAATGAAAAACCATTTAAGTGTCTACATTGCAATGCTAAGTATCCTTTTGGTTGGGAATTGAGACGCCATGTAAAAAATCAACATCCAGATGTTAAGGACCATAGTTGA
- Protein Sequence
- MEGELEIKEEPEDEESSRKTEVTIKSEPDEIEPGINSLHQGDTTIAPYKCHHCGLEWDKFSDIRKHIKSKHIKKKSKYKCHYCSFKGNLLIHLKKHVTEKHSDAALLWCPYCYYQTCIPYCLRYHVINKHLKGNSQHTIGAEHLLHLQKIDSIQNQNHQKSTREDDVAESVKNEPLDFESNNDLPFHGNETSTPYKCYHCGIEREKFGDLRKHIKSKHVVKLLKQQCPYCCFKGTFLQELKNHIKENHPNERILWCPYCYYQTSIPYCLRFHVIKKHIKRNAKHKVGAKLCRDLKKMTYNFTSKLPNGIHSYECFHCHKSWQDLDVLKSHIDLIHIKNFAQKRKLTKKDRPNKCPYCSYRTAQGDYLKHHINAKHTKAAVYPCPFCPYIAYMKNSLSYHLKVKHTDINQKLCCPHCDFTAFTGTILKYHIIGEHTKDKHLSCPHCDYKSFRPYLLRFHMLKHTKEKNYPCQECDYKASRPELLKHHIKCKHNPEKFKCKFCDFKAPQYSQLKMHLHLNHKDELMHKCPQCDYKAARAFTLKCHLQLKHNSDKKFSCDQCNYKTSLSYKLKLHIDIKHCKEKLHKCPHCSYAVAQAFSLKNHIKIKHDREKPHQCPSCDYRCASASYLLSHIRVKHTKEKIFKCEYCDYTSGSNSSLKYHIKSKHLRDSFRQCPHCEYSALTTSAYNRHIKRLHSNEKPFKCLHCNAKYPFGWELRRHVKNQHPDVKDHS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -