Eher081992.1
Basic Information
- Insect
- Euschistus heros
- Gene Symbol
- -
- Assembly
- GCA_003667255.1
- Location
- RCWM01000314.1:389938-399741[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00026 0.16 15.1 1.4 1 23 7 30 7 30 0.97 2 21 3.3e-05 0.021 18.0 0.8 2 23 37 59 36 59 0.96 3 21 1.1 6.8e+02 3.8 5.1 1 23 137 160 137 160 0.93 4 21 0.0082 5.2 10.4 0.8 1 23 190 213 190 213 0.95 5 21 6.4 4e+03 1.3 1.6 1 23 238 260 238 260 0.95 6 21 0.0011 0.69 13.2 2.2 1 23 298 321 298 321 0.96 7 21 0.17 1.1e+02 6.3 0.2 2 14 342 356 341 365 0.79 8 21 0.0041 2.6 11.4 0.1 2 23 374 396 374 396 0.95 9 21 9.7 6.1e+03 0.8 0.3 9 23 418 432 416 432 0.85 10 21 0.002 1.2 12.4 1.1 2 23 493 515 492 515 0.95 11 21 0.00025 0.16 15.2 2.4 2 23 522 543 521 544 0.95 12 21 0.0088 5.5 10.3 2.9 1 21 562 582 562 583 0.93 13 21 1e-05 0.0066 19.5 2.1 1 23 602 625 602 625 0.98 14 21 0.023 14 9.0 4.2 1 23 628 651 628 651 0.95 15 21 0.15 96 6.4 0.6 2 23 658 681 657 681 0.92 16 21 1.8 1.1e+03 3.1 0.0 1 23 717 740 717 740 0.89 17 21 1.5e-06 0.00093 22.2 1.0 1 23 748 770 748 770 0.97 18 21 0.00047 0.3 14.3 0.2 2 23 776 797 775 797 0.95 19 21 0.00076 0.48 13.7 0.3 3 23 862 883 861 883 0.96 20 21 0.056 35 7.8 0.3 2 23 954 976 953 976 0.95 21 21 1.6 1e+03 3.2 6.4 1 23 1050 1073 1050 1073 0.96
Sequence Information
- Coding Sequence
- ATGAATTTTGAAAAgctttaTCGTTGTGATCTGTGCAATAAATCTTATTCCATGGCTAAACATTTATGGGGCCATGTAAGTACAACACATAAAGGGCACCCAATGGTTACTTGTAGTTTATGCCAGCGAACATTTTCATCGGTTTCTAATCTTGAAGACCACAAACGTGTTAAACACAAGGATGAAAACAATCCAGAGCTTaatactgATCCCCCAACTGCCTTTGAGGAAGGTATTCCTGATctattaatagaaaagaaacCTGAAGAGGTATCATCAAACCGAAGAAAAAATTCTAAGCCTAGAAAAATTGAAAGAGAACAATCTCAAAATGACTGTTATGTACCAGCTGAAAATCATGAAAGTTCGATGAAACTTGAATTTGAAAAGGCTTCTGCAGATCCAGTTTACTCTTGTCTCTTATGCCATGACAAATTCAGAGAAGCTGATCATCTTAGTCAACATCTTTCTGATTGCCATGGTTATGATGGGCCATTAGATTTCAGTACGTATCGTGATGAAACTGGTGAAGATTATGCAGAGAGTATGATGGAATTAGAAACAGTTTTTTGTTGTGAAATCTGTATTAGAGAATTTAATGATAGAGGTAGCTTATGGCTTCATATGTTATATTCTCACCGCGCGATGAAGCTTCTAAAGCTTGTGCATGTAGAATCTGCTCATCCTAGAAGTAAAACAGATCAGAGGCGATATAGTTGCCAAGTTTGTGCTAGACAGCATGATTCTAGAAAAAAACTTGTTACTCATGCTAAAATACACAATTTGGTAGATGCTGAAGGAAATCTTGTTGATCCTGAATCAGTTGTTATTCTGAACAGTGATTTTTATCCTGATGGTTTCTCAGGTCCACCACTTGATGATAGTTATATGCATAGTTGTGAAATATGTTTCAAAGTCTTTGAAAATGACACAAAATTACTGAAACATAAACGTAGTGCCCATCGTGATTCTATGGAAAGATGGCGTCATATGGCTTCAACGCATGCTGGTGATCTGAGTGTTACCTGTGAGGTACCAGAATGTGGTAAAGTTTTTCCCACCAGTTCCATTAAAAAAGAACATGCAGCTCATCATGCTGCTCAAGGCCAGTACCCAAATACATGTGAAGTTTGTGGGAAAATGTGGAAAACAAGAGTGGAATATTGGAAGCATATGATGGGTGTACATCCTGATTGCTTACCTTTTATTTGTGGAGAGGAGACTTTTGTTGTGATATTTGTGGTAGgcctattctattctaaagtATCAAAAATGACAAGGCACAGAAAAGTGCATTATGTACCTGATAATCCCCCAGAACTTCAAGCTCTTCTTGAAAACCCCAAAGTTGAAAGTGAACCTCACTTTCTTCAACAAACTTCTACATTGGCCTGTGATTTGTGTGACGGTAATACTTATGAATATGCTAATGTTGAAGAACTTGGTAAACACAGACAAGAAACTCACAATGTGATGCCATGTGATTTGTGTACAAAGTATTATGGAAGAACATCACATTTATGGAAACatgttaataaaattcataaaggtCACCCTGATGTTACTTGTCCTACTTGCCAGCGTACCTCTGCGTCAAAATCTCATTTAGCTACTCATATTGCAAAGCATCATCGTAGTGAAGACTTAGTTAGTTCTAAGGGTGAAAAAGAAAGTAACGGTGTACATACTTGTGAAAAGTGTTCAAAAGTATTTAGAAAAGAAACATTAGTTAGGAAACATGTTAAGCATTGTAAGGGTCCTAGGCCAACACCAATCCCTCTTCCTGCGCCAGTTGATGGAGTTTACACCTGTGAAAGATGTGATAAATCTTTTAGTCTTAGTAATTTGCTTTATAAACACATGAAAAGTTCACATGTTACATTTACTTGTGAACTTTGTGAAACCAAGTGCAATACAAAAACTGAACTGTACCAACATATTTGTGCTGAACATGCTGACCATCCTGATGTCAAGTGCGGTGTCACTGGTTGTGACAAAATTTTACGGTGTAAAGCAGATCTTGAGAAGCATCAGAAAGGACACCGGCTTAGTTTTCATTTACATTACTGTATATTCTGTGCTGAATTAGTTACTAGTAAATATAAGATGAGAAGGCATTTAAAAGCAATTCATGCTAATGAAAGTAAGTATTTATGCGCTATATGTCTAAAAGCACTACCTGGCTATAAAGAACTTCAAGCACATGTTGAGGCAACTCATCAAGCTGCATTACAACGAGCTTTTGCTTGTCCTATCTGTGGAAAACcttgtacaaataaatctaagTTAATGGAACATATTAAATATCATGGGTCTAATTTCCTTCCTTGCAAAAtttgcttaaaaatattttcatctaaAGAAGAACTTGATACTCATATCGATAATCATCCAAGTGACAGTGGAGATGAAGAAGACCAGGTAGAAGATGTGGAACTGGATACGAATAGTATAATGGATATTATTGGTGCTCCAAAAACTAATGTAAATGTGAAAATTGAGGAGAAGGAAAGTGAAAAACGAAAAGCTAAATCAGAAAGTGAAAATAGCAAaccaaaaaagaaaactaaactgGAAATTCTTTGCACTATTTGTTCCGACATTTTTACTTCCAATGTAGACTTAAAGAAACACATGAGAGATGCacataaaaataagaaagtagATGATAAATCAGAAAACTTAGCTTCATGGGATACAAATGTATCGGACAGTaccaataatgaaaataatactgACTGGGAGACCACCACTAATTCTGACAAAACCTTCATGCATCAACTAGGCCTTATGCCTGAAACTGAAAAATCAAAGTTAAAGACTGTTAGAAAGGTATACACTGATGATTTTACCCCCAGTGAATGTGAACTTTGTGGCAAAGTTTGGCCTGCTAAACGCCATCTTTGGCAACATTTGATCAGATTTCATAAGTCAGAAGCAGGTAGGACTTGTGGAGTCTGTTTAAAACTGTGTCCTGATTTTCCTTGTCTGAGTGCCCATTTGGCCATAGAACATCCTAATAATTTTGATGGTGAAGCAACTAATGTATCTTGTCGGGTATGTGGTAAGTATCATGGTGCTAGATCCAAGTTACTAAGCCATGCCAGCATACATATAGGGCATGAAGAAAGGGCTACAGATGATGTGCATCACTGTCTTATTTGTAAAGATACTTTTGTTGAATTTTCTCAGTTTTGTGATCACATTAGAAAAGATCATAAAATTGATGGAGGTGAAAGTAAACAATCTGTAAATGAACCTGAACCTTCTGTAGATAAAGATGTTAATGAGTCAAATTCGTTAAAATGGTAG
- Protein Sequence
- MNFEKLYRCDLCNKSYSMAKHLWGHVSTTHKGHPMVTCSLCQRTFSSVSNLEDHKRVKHKDENNPELNTDPPTAFEEGIPDLLIEKKPEEVSSNRRKNSKPRKIEREQSQNDCYVPAENHESSMKLEFEKASADPVYSCLLCHDKFREADHLSQHLSDCHGYDGPLDFSTYRDETGEDYAESMMELETVFCCEICIREFNDRGSLWLHMLYSHRAMKLLKLVHVESAHPRSKTDQRRYSCQVCARQHDSRKKLVTHAKIHNLVDAEGNLVDPESVVILNSDFYPDGFSGPPLDDSYMHSCEICFKVFENDTKLLKHKRSAHRDSMERWRHMASTHAGDLSVTCEVPECGKVFPTSSIKKEHAAHHAAQGQYPNTCEVCGKMWKTRVEYWKHMMGVHPDCLPFICGEETFVVIFVVGLFYSKVSKMTRHRKVHYVPDNPPELQALLENPKVESEPHFLQQTSTLACDLCDGNTYEYANVEELGKHRQETHNVMPCDLCTKYYGRTSHLWKHVNKIHKGHPDVTCPTCQRTSASKSHLATHIAKHHRSEDLVSSKGEKESNGVHTCEKCSKVFRKETLVRKHVKHCKGPRPTPIPLPAPVDGVYTCERCDKSFSLSNLLYKHMKSSHVTFTCELCETKCNTKTELYQHICAEHADHPDVKCGVTGCDKILRCKADLEKHQKGHRLSFHLHYCIFCAELVTSKYKMRRHLKAIHANESKYLCAICLKALPGYKELQAHVEATHQAALQRAFACPICGKPCTNKSKLMEHIKYHGSNFLPCKICLKIFSSKEELDTHIDNHPSDSGDEEDQVEDVELDTNSIMDIIGAPKTNVNVKIEEKESEKRKAKSESENSKPKKKTKLEILCTICSDIFTSNVDLKKHMRDAHKNKKVDDKSENLASWDTNVSDSTNNENNTDWETTTNSDKTFMHQLGLMPETEKSKLKTVRKVYTDDFTPSECELCGKVWPAKRHLWQHLIRFHKSEAGRTCGVCLKLCPDFPCLSAHLAIEHPNNFDGEATNVSCRVCGKYHGARSKLLSHASIHIGHEERATDDVHHCLICKDTFVEFSQFCDHIRKDHKIDGGESKQSVNEPEPSVDKDVNESNSLKW*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -