Eher082924.1
Basic Information
- Insect
- Euschistus heros
- Gene Symbol
- -
- Assembly
- GCA_003667255.1
- Location
- RCWM01000324.1:111012-114120[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.003 1.9 11.8 0.6 1 21 348 368 348 370 0.90 2 17 3.2 2e+03 2.3 1.0 1 23 376 398 376 398 0.88 3 17 0.47 3e+02 4.9 1.9 3 20 408 425 407 427 0.90 4 17 0.56 3.6e+02 4.6 0.5 2 23 456 478 455 478 0.93 5 17 1.7e-05 0.011 18.9 4.4 1 23 485 507 485 507 0.97 6 17 4.4e-05 0.028 17.6 6.3 1 23 516 539 516 539 0.96 7 17 0.011 7.1 10.0 0.1 2 23 550 572 549 572 0.93 8 17 0.097 61 7.0 2.0 1 23 593 615 593 615 0.96 9 17 0.02 13 9.2 0.3 1 23 621 643 621 643 0.97 10 17 0.11 71 6.9 2.0 1 23 662 684 662 684 0.94 11 17 2.7 1.7e+03 2.5 2.8 1 23 690 713 690 713 0.88 12 17 4.8e-06 0.003 20.6 0.8 1 23 729 751 729 751 0.98 13 17 9.3e-07 0.00059 22.8 0.5 1 23 757 779 757 779 0.98 14 17 0.002 1.3 12.3 0.4 1 23 785 807 785 807 0.98 15 17 0.00022 0.14 15.4 3.3 1 23 813 835 813 835 0.98 16 17 5.6e-06 0.0035 20.4 0.9 1 23 841 863 841 863 0.99 17 17 0.00066 0.41 13.9 3.5 3 23 871 892 870 892 0.93
Sequence Information
- Coding Sequence
- ATGCCGAAACAGTGGGCCTCTATTGTAGTGAGTTTAGAAAcggagaataaaatgaaattgataAAGGTGGAAAAAAAAGTGGGTTTATCTCTTGACCTGAAAGATATAGCTATAAAAGGAAAGAAGATATCCGAATCACAACTTGTGATAGACTACTTCGGTTGTTACCTTCCTACAATGGAACCACctcaatcaaaaatattttgtgtcGTACCTGGATgcaaaaatacaaaagaaagaaATCCTGAAAAAGTATTCTTCGAATTTCCTTCAGAAGAAATTAGATGCCATCAATGGGTTTTGTATTGTCAACGTTTAGCAGTAGGTTCACGTAAAAAACGACTTCATATAACTCCTGAATCCACTATTTGTAGTGACCATTTCCGACCAGACCAGTTCGTAAAAAACACAAATACTCTTTTGAAAAGAACAGCTGTTCCCTGTATGAAATTTTTCGTTGATGAATTGAAAGAAACAAATCAGTATTCTGAAGGCTATGGTTTTGTTAATGCAAATTATGTTGTGTTGGAAACATATGAAGAGAAAAAGTACTTTGAAACAGTTTGTCCCTTATGTGATGATGGGAAGCTGCAAAGCTGTTCTCCTGCCAACTTCAATAACATTAACAAGCAAGCAAATAGCAATGATTTTCCTTATGAAACAAGAGGTAACTTTATTTGTCATGACCTCTATTTACTAGATGAATACAATCAACTCATCAATGCTGGAGACCTTCAACCAAAATTTGAAGGGAATGACTCTTCATTTGCTTTAGGTAGTGAATCACAAACTAGAATGGAAGTCAGTGCTCTATGTGAACCAATTCTTACCCACAGAGATCCTATTAAAATAGAAGAGAAATCTCCAAGACATGAAACTGAAGATATCATCAACTCTTTTTCTCAATTGGGAAGCCCGCTAGGCTTTGAAGAGCTCAATAATAGTgcccttaaaaaaacatttctatcaGATTCAGATCTTTTGAGTACAGAAACAACTAATAAAATGGTGGTGTATGATCAATTGGAGAAAGGATTGATTTTTATCTGTCGAATTTGTGCCAAAGAGTTTTCTAAAAGCTCTGAACTACTTAGTCATTCTTACGATCATTCATgtagaaaattttatcaatgcTGTGCCTGTGTACGCTGGTTTTTAGATAAAGATGATTTAGAACAACATTTACAGCAACATTTAGTACTAGAAGACACTGTTGCATTCTGTAACTATTGTCGTGAGcgttttaattcttctttactATTAGGAAGTCATTTATgtttcaaagaaaataaatgtactCTATGTTACACTAATCTACGAACTGATTCCCAAATTTGTGAACACTTAAAGTTTTCCAGCAATTCAAGATGCAATATCTGTTTTAAGATATTAGGAGATGATCTAAAACTTCAGAAGCACTTGCTCTACACTCATTCCTCATCTAGCAGGACTCATTGCTGTGAAGAATGTGGAAAAGTATTCAAATCAGAAGCATCCATGAAATATCATCAGAGAACTCATCAAAATAACGATGGAGCTAAACCATATTGCTGCAGTAGATGTGGTAAATGTTTCATGAGAAAATCAATGTTAATCAATCATATGTCTTCAACTCATACTAATGTAGTTGCTGAAACATCTTGTATTACTTGCAAATTTTGCAATGAAACTTTTCCCAACACTGATGCTGCTGTAGCACATATGGATAACATTCACAAGATGGAATCAATGGAAAATGCCACCTACAGTTTTGAAATGCAAACTGTAAAAAGGGTATTTATTTGTGAATTTTGTGAGCGTTGTTTTGTAGAAgattctatattaaataaacaccGAGAAAAACATCCATCAGAGAAACCTTTTGAGTGTAAATTATGCCGCAATATATTTGTCTCTGAAGAAGAACTTGACAACCACAAGCTTTCTCATAGAACTGATAACAAAGCAGCTGAATATGCAGTCGATTTCACTCTACCTAAGACATATTTGTGTGAGTATTGTGAAAGATGCTTTCTTAATCAAGTCAAATATTCAGAACATCTGAGTATCCATTTTGGGCCAGAGCCATATAAATGCAAGCATTGCCCTTTAATAAAATTCCAGACCCTTCATGAGGCAATAGAACATCGTGAGAGACACGAAGAAATGCTACCTGAACCAGAAGAGTTTGATTCCTTCCGCCCTTATGATTGCCACTATTGCAGTAAGACTTTTGCTATAGAAGACGCATTAATAAAGCACATAAGAATGCATACTGGAGAAAAGCCATTCATATGTGACCAGTGTGGTAAAGGTTTCTCACAAAGCTCTGGCTTATACACTCATCAAAAGGTCCATTCTACAGAAAGACCATATTCTTGTTCAGTTTGCCCAAGAACGTTTAAGATCAAAGGAGATAGGGATGTTCATGTCAGAAAACATTCAGGAGACCGTCCATATAAATGCGAATATTGTGGAAAAGCTTTCATGACTCAGCATGTTTACAGCCAGCATAAGAAAATTCATACTGGAGAAAGGCCTTATAAATGTGATGTTTGTGGGATAGCATTTCGCAGATCTCATGTTTTAACAGTTCACAAACGGATTCACACAGGAGAGAAGCCAAATATTTGTCATATATGTGGAAAAAGCTACCGCCAGAAAGGTGATATGTTGAAGCATTGTAGAGTTCAACATggaatttttaatacaaaaaaagttCTAAGTCCTTTACTGCCTTGCTGA
- Protein Sequence
- MPKQWASIVVSLETENKMKLIKVEKKVGLSLDLKDIAIKGKKISESQLVIDYFGCYLPTMEPPQSKIFCVVPGCKNTKERNPEKVFFEFPSEEIRCHQWVLYCQRLAVGSRKKRLHITPESTICSDHFRPDQFVKNTNTLLKRTAVPCMKFFVDELKETNQYSEGYGFVNANYVVLETYEEKKYFETVCPLCDDGKLQSCSPANFNNINKQANSNDFPYETRGNFICHDLYLLDEYNQLINAGDLQPKFEGNDSSFALGSESQTRMEVSALCEPILTHRDPIKIEEKSPRHETEDIINSFSQLGSPLGFEELNNSALKKTFLSDSDLLSTETTNKMVVYDQLEKGLIFICRICAKEFSKSSELLSHSYDHSCRKFYQCCACVRWFLDKDDLEQHLQQHLVLEDTVAFCNYCRERFNSSLLLGSHLCFKENKCTLCYTNLRTDSQICEHLKFSSNSRCNICFKILGDDLKLQKHLLYTHSSSSRTHCCEECGKVFKSEASMKYHQRTHQNNDGAKPYCCSRCGKCFMRKSMLINHMSSTHTNVVAETSCITCKFCNETFPNTDAAVAHMDNIHKMESMENATYSFEMQTVKRVFICEFCERCFVEDSILNKHREKHPSEKPFECKLCRNIFVSEEELDNHKLSHRTDNKAAEYAVDFTLPKTYLCEYCERCFLNQVKYSEHLSIHFGPEPYKCKHCPLIKFQTLHEAIEHRERHEEMLPEPEEFDSFRPYDCHYCSKTFAIEDALIKHIRMHTGEKPFICDQCGKGFSQSSGLYTHQKVHSTERPYSCSVCPRTFKIKGDRDVHVRKHSGDRPYKCEYCGKAFMTQHVYSQHKKIHTGERPYKCDVCGIAFRRSHVLTVHKRIHTGEKPNICHICGKSYRQKGDMLKHCRVQHGIFNTKKVLSPLLPC*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00715179;
- 90% Identity
- iTF_00715179;
- 80% Identity
- iTF_00715179;