Eher100953.1
Basic Information
- Insect
- Euschistus heros
- Gene Symbol
- -
- Assembly
- GCA_003667255.1
- Location
- RCWM01000693.1:79485-88482[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0029 1.8 11.9 3.2 1 23 83 106 83 106 0.95 2 24 0.0057 3.6 10.9 1.6 1 23 112 135 112 135 0.97 3 24 0.0046 2.9 11.2 2.6 1 23 141 164 141 164 0.97 4 24 0.0088 5.6 10.3 0.5 1 23 170 193 170 193 0.92 5 24 0.38 2.4e+02 5.2 1.2 1 23 199 222 199 222 0.90 6 24 0.0033 2.1 11.7 1.2 2 23 226 248 225 248 0.97 7 24 0.2 1.2e+02 6.1 0.3 1 23 254 277 254 277 0.93 8 24 0.0015 0.93 12.8 1.0 1 23 283 306 283 306 0.96 9 24 0.04 25 8.3 2.1 3 23 310 331 308 331 0.95 10 24 0.41 2.6e+02 5.1 1.9 2 23 367 389 366 389 0.94 11 24 0.013 8.5 9.7 0.2 1 23 395 418 395 418 0.92 12 24 0.063 40 7.6 2.3 1 23 423 446 423 446 0.95 13 24 9.5e-05 0.06 16.5 1.9 1 23 494 517 494 517 0.96 14 24 0.37 2.4e+02 5.2 0.1 1 23 523 546 523 546 0.91 15 24 0.012 7.4 9.9 0.4 1 23 552 575 552 575 0.97 16 24 0.022 14 9.1 2.0 1 23 605 628 605 628 0.93 17 24 0.043 27 8.2 5.4 1 23 652 675 652 675 0.96 18 24 0.001 0.64 13.3 0.2 1 23 681 704 681 704 0.96 19 24 0.004 2.5 11.4 1.8 1 23 710 733 710 733 0.95 20 24 0.0017 1.1 12.6 1.6 2 23 740 762 739 762 0.94 21 24 0.51 3.3e+02 4.8 1.7 5 23 772 791 770 791 0.93 22 24 0.00022 0.14 15.4 1.9 2 23 797 819 796 819 0.95 23 24 0.00019 0.12 15.6 1.3 1 23 877 900 877 900 0.95 24 24 0.11 69 6.9 0.1 1 23 906 929 906 929 0.93
Sequence Information
- Coding Sequence
- ATGGCATCTAAAGTGATAATAAAGCAAGAAGTTTTTGAAGAAGAGGAGAGCCTAGTTGAAGACAATTTCTTTGATGAAAGATTAAATTATAATGGCGATATTGACTTGACAGTTATCAAGCAAGAGGCAGAATTACTGTTAGAAGAACTTCCAATGGATCATGCTCCACCAAATAAACGACTAAAGGATGATGGTCCTCAGATCAGTGTTAATGTTAATGgacctGCTCGTAAAAAAGCGAAAATTCATGAATGTCTTCAGTGTCACTATAAAACTGTGAGACCTGATCATTTAATTCGGCATGAAAGAGCTGTCCATCTTAAAGATAAACCGTTCAAATGTTCCCAATGTACTTTTAAAACGGTTGAAGCTATTACTCTTAAGAGACATATGATGTCAAAACATCCATTGGAGGAACCATATCAGTGTCCACATTGTGAGTATAAAACTGTAAGCGAGCGTTATATGAGCAGGCACCTACAAAGTCAGCACCAGGATAAAAATGTTCATTCTTGTTCAGAATGTGGATATAAGACTGAAAAATTTGAGGACCTAGAAAATCATATTGCAGATCTTCATGCCAAACCTCCATTGCATCAATGCCACGTTTGTTCTTTTAATGCGCAAAGTGCCAAGAACTTAGAAGATCATGTTACTGCTCTTCATAAAGTTCAGCAATGTTCACTTTGTGAATATAGTACTACTAATCTTCGTGACATGAATAAACATACTAGGTCTGTTCATGCTAAAGATAAACCATACAACTGTTCACAATGTGGCTTTCGAGCTGAAATGTTAGGAAGGTTGAAAAGGCATATATTGGCCAAGCATCCTCTTGAAAAACCCTATCATTGCCCAGATTGTGATTACAAAACAGCTAGTGAGCGTGATATGAAAAGGCACGCAGAGACCCAGCACCCTCACCTTTGTCAAAAATGTgagttcaaaactcccaattatcAGGatttagaaaaacatatttccacatatcaTAAAGATACTGATTCAGATTCTAGTGAAGATGATGAGTCTGTAAGTAAAATAACTTATGAAGTGGAAAAGGATTTAACTGTCTGCAATACAAAACATAAATTGCTAGAGTGTTCACTGTGTGAATATAAAACTTCACTTCATCGAGATTTAAGTAGACACAGCAAGATAAATCATATGAAAGACAAGCATTTTCAATGCTCTCTTTGCGACTTTTCTGCTGTTGAGTTTGTTAATCTAAATAGGCATATGGTAGCCAAGCACCCAAGGGAGAAACATATTTGTCCTcattgtaattttaagacaGAAAACGAACAGTCTATCAAAAGGCATCTTGTAACTGCCCATCCTAAAAGAAAAGAATGCTCTTCTTCTGAGAGTAGTAATGAACTGGAACAGGAGCTCATAAATCATTCAATGATCAGCAATGTAGGAAGTGTTTGTGATCCTCAAAGTAATAGTGACCAGTATATCAATGACCAACAGCACTACGAATGTGTCCATTGTGATTTTAAAACAACCAATCCTGTCCATTTAAATAGACATATAAAGGCCATCCATGCTAAAGAAAAGCCTTACCAATGTTCTCAATGTGGGTTCAGAGCCGCAGAAGCTGTTATTCTGAAAAGGCATGTGATGTCTAAACATTCAAATCAGAAAAACTATCAATGCCCAGATTGTAGCTATGAAACTACGAGTGTTCTTGAAATGAATAAGCATACAACTACTATCCACCCTAGTGATTTAGAGGAACAGATCGACATCAGCTTGAAAGAATTATCGAATTCAAATGATGTTGAGGATCAAGAGGCAGCTCACCCTCACCGGTGTATACAATGTGATTATGTTACATCATCTTATAATGAATTAGAAAATCATATGAAAAACAAGCATTCAATTAAAGACTCAGATGTTTTTGATTTGGAAGGAGATAATAAAGGAGAAGATAAGAAAGTAAAAGTTCATCAATGTTTGCATTGTCAGTACCAAACCATTTCTGCTCATCATTTAGTAAGGCATGTTAGAGCTATCCATAAGAAAGAAAAACCATTCAAATGCTCCGAGTGTGGATTCAGTGCTGTTGaggctatttatttaaaacggcACATGATGGCAAAACACCCTTTAGAGAAACCCTATCATTGTCCGGATTGCGATTTTAAAACGGAGAGTGAGCGAAACATGAAGAGACACACTGAGATCCAACATCCTGTCGACAACCCTTCACAATGTAAAAATTGCAAGTACAAATCATCCAGTCTCTCAGATTTGAAGAAGCATGTAATGGCCTTCCATAGTGATAAGGATTCACATAGTAGTCAACATTGTGAATTCGTAGCGGATAGTAGCCATCAATTGGAAAAGCATACAAAAACCTTACACTCTAAAGAAAAGCTAAATTGTTCACACTGCGGTTATGCTTCAAAAAATCATTACGATTTAGAAAAGCATATTCTTTCTGTTCATAAAAACAGTTTAAATCAGCATATAgtgctaaaaaatttaaaaaagaagatttacaatattaaaaaacctGTTTGTAAATCAAGATCTTCCTCTGATGTACAAAAAGAAGCTGTGCCTTTGAATATTAAGGGGATGAAAACTTCAAAAGGcataaagacaaaaataaaatcgttcCAGTGTGGGCATTGCGACTACACAAGTGAATACAGTCGTAATTTGAGAAGGCATGTGATGGCAGTGCACAAAAAAGACAAACCTTTTATTTGCCCTCTTTGCAGCTTCAGTGCGGTTGAACTTAGTTACTTGAAGAATCATGTACTCCTCAAGCATTTGTGA
- Protein Sequence
- MASKVIIKQEVFEEEESLVEDNFFDERLNYNGDIDLTVIKQEAELLLEELPMDHAPPNKRLKDDGPQISVNVNGPARKKAKIHECLQCHYKTVRPDHLIRHERAVHLKDKPFKCSQCTFKTVEAITLKRHMMSKHPLEEPYQCPHCEYKTVSERYMSRHLQSQHQDKNVHSCSECGYKTEKFEDLENHIADLHAKPPLHQCHVCSFNAQSAKNLEDHVTALHKVQQCSLCEYSTTNLRDMNKHTRSVHAKDKPYNCSQCGFRAEMLGRLKRHILAKHPLEKPYHCPDCDYKTASERDMKRHAETQHPHLCQKCEFKTPNYQDLEKHISTYHKDTDSDSSEDDESVSKITYEVEKDLTVCNTKHKLLECSLCEYKTSLHRDLSRHSKINHMKDKHFQCSLCDFSAVEFVNLNRHMVAKHPREKHICPHCNFKTENEQSIKRHLVTAHPKRKECSSSESSNELEQELINHSMISNVGSVCDPQSNSDQYINDQQHYECVHCDFKTTNPVHLNRHIKAIHAKEKPYQCSQCGFRAAEAVILKRHVMSKHSNQKNYQCPDCSYETTSVLEMNKHTTTIHPSDLEEQIDISLKELSNSNDVEDQEAAHPHRCIQCDYVTSSYNELENHMKNKHSIKDSDVFDLEGDNKGEDKKVKVHQCLHCQYQTISAHHLVRHVRAIHKKEKPFKCSECGFSAVEAIYLKRHMMAKHPLEKPYHCPDCDFKTESERNMKRHTEIQHPVDNPSQCKNCKYKSSSLSDLKKHVMAFHSDKDSHSSQHCEFVADSSHQLEKHTKTLHSKEKLNCSHCGYASKNHYDLEKHILSVHKNSLNQHIVLKNLKKKIYNIKKPVCKSRSSSDVQKEAVPLNIKGMKTSKGIKTKIKSFQCGHCDYTSEYSRNLRRHVMAVHKKDKPFICPLCSFSAVELSYLKNHVLLKHL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -