Eher115704.1
Basic Information
- Insect
- Euschistus heros
- Gene Symbol
- -
- Assembly
- GCA_003667255.1
- Location
- RCWM01002298.1:41742-50309[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.1e-05 0.0071 19.4 0.6 1 23 163 186 163 186 0.92 2 19 1.8e-06 0.0011 22.0 0.8 1 23 192 214 192 215 0.96 3 19 0.0021 1.3 12.3 0.2 1 23 221 244 221 244 0.94 4 19 0.025 16 8.9 0.1 1 23 250 273 250 273 0.91 5 19 0.00014 0.086 16.0 1.2 1 23 279 301 279 302 0.95 6 19 0.034 21 8.5 2.7 1 23 308 331 308 331 0.94 7 19 0.0032 2 11.7 0.4 1 21 337 357 337 358 0.93 8 19 0.34 2.1e+02 5.3 3.4 1 23 366 388 366 389 0.95 9 19 8.6e-05 0.055 16.6 1.8 1 23 395 417 395 418 0.95 10 19 8e-05 0.05 16.8 0.4 1 23 424 447 424 447 0.96 11 19 0.0021 1.3 12.3 0.7 1 23 453 476 453 476 0.96 12 19 0.012 7.4 9.9 0.3 1 23 482 505 482 505 0.94 13 19 4.2 2.7e+03 1.9 3.0 2 23 512 534 511 534 0.87 14 19 0.007 4.4 10.6 0.6 5 21 553 569 551 569 0.95 15 19 0.0036 2.3 11.5 2.3 1 23 607 630 607 630 0.95 16 19 2.1e-05 0.013 18.6 1.2 2 23 637 659 636 659 0.97 17 19 0.003 1.9 11.8 0.8 1 23 665 688 665 688 0.96 18 19 0.0014 0.88 12.9 0.4 1 23 694 717 694 717 0.95 19 19 0.00018 0.11 15.6 1.2 1 23 723 746 723 746 0.98
Sequence Information
- Coding Sequence
- ATGGAAGGGCCTCCTCTTTACCACCAAAAAAGGGACTTGAGAGATAATGGACTAGCTCACCCACTCTTCGCCAGACCCTCAGTCCAGCAACAGGTCTTTTCTTCTGGTACAGGCTACCTGCCTCCAGGTTTCTGGATCGATTTCAGGGAGAAGGAAGGCCTTTTTAAAACCGTGACATGTGATGAGACTTGGGTAAATCACTACACCCCAAGTCAAAAATGGCAACTAAGGAGTGGTGGAGATAGGATGAAGCCTATTGAAACAAAAGACGAGACATGCCCCATCACAGATGTCATTATCCTCCATGACTACACCAGGCCTCACACCATTGCTTTGACAAGGGATACACTGGAAGAAATGGGTGCCAAAGATATTCCATCCCAGATTGAGCTGACGAATAAAATGAGCCTTCTTTATGACCTCAAAGCAGTGAATTCCAGTAAGTTAAGGAGACGTAGGAAAACCATACTTAATCGTGGAAAGCCCTGCAAGTGTCCTCAGTGTGAATATAGTACTACTAGACCTGGAAATTTGAAAAGGCATATAATAGCTATTCATAGAGATGAAAAGCCTTATAAGTGTCCTGAATGTGATTATAATGCTACACAAAGTGAAGCTTTGAAACGCCATATAATGACCCATCATATTGGTAAAAAGCCTCATAAGTGCCCTGAATGTAAGTACAGTGCTGCTGAAGCTGGaactttgaaaaaacatataatagcTCGCCACACAGATGAAAAGCCTTATAAGTGTCCTCAATGTGAGTATAGTGCTGCTGAAATTGGAACTTTGAAAAAGCATATAGTAGCTCGTCATACAGATGAAAAGCCCTATAAGTGTCCTAAGTGTGAGTATAGTGCTAAACAAACTGGAACTTTGAAACGCCATATAATAGCCCACCATACTGGTGACAGGTCTCATTATTGTCCCTATTGTAATTACAAATCAGTGGAAGCTATATGTTTGAAAAGACATTTAATGGCCCGTCATATAAATGATAAGATCCATAAGTGTCCTAAATGTGAATATTATACTACAGGTAATGGAAATTTGAAGAAACATGCAATGATTTATCAAACTGGTGAAAACCCTCATAAATGTCCTAAATGCAAATACAGTGCTACAGAAGATGGAAATTCGAAACAGCACATAATGACCCACCATACAAGTGAAAAGCCTCATAGGTGTCCTCAATGTGAATATAGTTCTACTAAAgctggaaatttgaaaaatcatattataattCATCATACTGATGAAAAGCCTCATAAATGTCCTGAATGTGGATATAGTGCTAAAGAAGCGGGAactttaaaaaagcatataataTCTCGACATTCAGATGAAAAGCCTTATAAGTGTCCTCAATGTGAATATAGAGCAGCCCAGACTGGAACTTTGAAACACCATATAATGGCTCGTCACACTGGTGAAAAGCCTCACAAATGTCCTCTGTGTGATTATTATTCTACTGAAGCCGGATCTatgaaaaaacatataatagcTCTTCATACAGATAGAAAGCCTCTTAAGTGTCATGAATGTGATTATAATGCTTTAGAAACCAGAAGTTTGAAAAAGCATATTATGGCCCGACATACAGGTGCCAAAGATATTCTATCCAAGACTGAACAGATAAATAACCTAAGACTTCATTGTGACTTCAAAACTGTGAATTCCAGTAATTTAACAAGACATATGAAGCCCATGCTCAGTTGTGGAAGACTTCTTACTCACCttgaatatgaatataatatccCGCCAGGTTCCAATATGAAAAGGCAGATAATAGCTAATAATGCTGGTAGAAAACCTTATCAATGTTTCCACTGTGATTATAAAGCAGCAAAAATGTCCACCTTAAAAAGGCATTTAATGGCCCAACATAGTGGTGATATTTCTCAGCAGTGTCCTTATTGTGATTATGTATCTGAGAAAGCTTCAAATTTGAAAAGGCATTTTAGGAAGCGTCATACAACTGGAAAATCCTATAAGTGTCCTTTCTGTGAGCATAATGCTTCAGAATCTGGAAgtttaaaaaagcatattatGGCTCgacatacaggtgagaagccccATAAGTGTCCTGAATGCAAATTTAATGCAACAGAACCTGGGAATTTGAAGCAGCACATAATGGCTCGTCATCGAGGGGAAAAGCCTCATAAATGTCCTGAATGTGAATATAGTGCTACGATAGCTGGACATTTGACACGGCATATAATGACACGCCACGCCATTCAGGAGAAAAGCCCCATAAATGTCCTAAATGTGAATATAGTGCTAAAGAAGCTGGAACTTTGA
- Protein Sequence
- MEGPPLYHQKRDLRDNGLAHPLFARPSVQQQVFSSGTGYLPPGFWIDFREKEGLFKTVTCDETWVNHYTPSQKWQLRSGGDRMKPIETKDETCPITDVIILHDYTRPHTIALTRDTLEEMGAKDIPSQIELTNKMSLLYDLKAVNSSKLRRRRKTILNRGKPCKCPQCEYSTTRPGNLKRHIIAIHRDEKPYKCPECDYNATQSEALKRHIMTHHIGKKPHKCPECKYSAAEAGTLKKHIIARHTDEKPYKCPQCEYSAAEIGTLKKHIVARHTDEKPYKCPKCEYSAKQTGTLKRHIIAHHTGDRSHYCPYCNYKSVEAICLKRHLMARHINDKIHKCPKCEYYTTGNGNLKKHAMIYQTGENPHKCPKCKYSATEDGNSKQHIMTHHTSEKPHRCPQCEYSSTKAGNLKNHIIIHHTDEKPHKCPECGYSAKEAGTLKKHIISRHSDEKPYKCPQCEYRAAQTGTLKHHIMARHTGEKPHKCPLCDYYSTEAGSMKKHIIALHTDRKPLKCHECDYNALETRSLKKHIMARHTGAKDILSKTEQINNLRLHCDFKTVNSSNLTRHMKPMLSCGRLLTHLEYEYNIPPGSNMKRQIIANNAGRKPYQCFHCDYKAAKMSTLKRHLMAQHSGDISQQCPYCDYVSEKASNLKRHFRKRHTTGKSYKCPFCEHNASESGSLKKHIMARHTGEKPHKCPECKFNATEPGNLKQHIMARHRGEKPHKCPECEYSATIAGHLTRHIMTRHAIQEKSPINVLNVNIVLKKLEL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -