Eher068084.1
Basic Information
- Insect
- Euschistus heros
- Gene Symbol
- -
- Assembly
- GCA_003667255.1
- Location
- RCWM01000208.1:566086-567825[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.099 63 7.0 4.4 1 23 10 32 10 33 0.95 2 19 7e-05 0.044 16.9 1.3 1 23 39 61 39 62 0.95 3 19 0.01 6.6 10.1 3.5 1 23 68 90 68 91 0.96 4 19 0.0037 2.3 11.5 0.3 1 23 97 119 97 120 0.95 5 19 0.00021 0.13 15.5 2.9 1 23 126 148 126 149 0.95 6 19 0.00031 0.19 14.9 2.3 1 23 155 177 155 178 0.95 7 19 0.00078 0.5 13.6 1.9 1 23 184 206 184 207 0.95 8 19 0.00046 0.29 14.4 0.5 1 23 213 236 213 236 0.95 9 19 0.019 12 9.3 3.6 1 23 242 264 242 265 0.95 10 19 1.2e-05 0.0074 19.4 2.3 1 23 271 293 271 294 0.96 11 19 0.004 2.5 11.4 1.4 1 23 301 323 301 324 0.95 12 19 0.00019 0.12 15.5 4.3 1 23 330 352 330 353 0.94 13 19 7.5e-05 0.047 16.8 0.4 2 23 360 381 359 382 0.94 14 19 6.9e-05 0.044 17.0 1.3 1 23 388 411 388 411 0.97 15 19 0.0012 0.76 13.1 0.6 1 23 417 439 417 440 0.95 16 19 0.034 22 8.5 4.3 1 23 446 468 446 469 0.96 17 19 5.1e-05 0.032 17.4 3.6 2 23 476 497 475 498 0.95 18 19 0.00039 0.24 14.6 0.1 1 23 504 527 504 527 0.96 19 19 1.9e-05 0.012 18.8 3.6 1 23 533 556 533 556 0.96
Sequence Information
- Coding Sequence
- ATGGTTCATCACACAAAAGAAAAACCCcataaatgtcctcattgtgaataTAGGGCTAGGCAGGTTGTACAGGTGAAGACACATGTTATGTCACACCATACAAAGGAAAAGCCGCAccaatgtcctcactgtgaaTATGGGGCAGTTCAACCTGGGAACTTGAGAACTCATATTATGATCCATCACACTAAAGAAAAACCTCACCAGTGTCCGCATTGTGAGTATAGGGCTGTGCAACTGGTTCAAATTAAAACACATATAATGACTCATCATACTAATGAAAAACCCTACCAGTGTTCCAATTGTGAATATAAAAGTGCTATAGCTGGCAATTTGAAAACTCATATTATTGCTCATCactccaaagaaaaaccttttcACTGTACTGATTGTGAATATAGTTCTGCTTATAGGGCAAACTTAAAAACTCACATTATGgttcaccatacaaaagaaaagcCTCACAAATGCCCTCACTGTGAATATTCTACAGTACTACCTGGCAACTTAAAGACACATATTGTAGTCCACCATACAAATGAAAAACCACACGTTTGCCCATATTGTGAATACTGTGCTGCTCTTGCAGTGCAGTTAAAAAATCACATTCGTATCCATCACACACTTGAAAAACCTCATCAATGCCCCAATTGTGAGTACACTGCAGCTCATgctgtaaatttaaaaacacatatCATGGCACTTCATACTAAAGAAAAGCCACACAAGTGCCCACATTGTGAATACCGAGCTGTTCAGGCTGGCAATCTTAAATTCCACATTATGTCCCATCATACTAAAGAAAAACCCTACAAATGTCCCCAGTGTGACTATAGTACTGCACATACTGGTAACTTGAAGACTCACATATTGGTTCATCATACCAAGGAAAAAAAACCACACCAATGTCCCTACTGTGATTATAAGGCAGCTCAAATAGTCCAAGTTAAAACACACATTATGTCTCATCATACAATGGAGAAGCCACATCACTGCCCCCATTGTGATTATAGAGCTGTACAACCTGGTAATTTAAAAACTCATATAATGGTACATCATACAAAAGAAAAGCCTCTACAGTGTCCTCAATGCGAGTATAGAACAGTTCAACCTGGAAACTTACGAACACATGTTATGGTTCATCACACTAAAGAGaaacctcatcaatgtcctcattgcgAGTACAAAGCTGTTCAACCtggtaatttaaaaacacacaTCATGTCACAGCATACTAAAGAGAAGCCCTTCCAATGTCCCTTTTGTGATTATAAAGCAGTTCAATCTGCACAGGTGAAAACACACATTATGGCTCATCACACCCATGAAAAGCCTCaccagtgtcctcattgtgaataCAGAGCAGTCCAGTTTGTCCAAATTAAAACACATATAATGACCCATCACACTCATGAAAAGCCTCAGCAATGTCCGCATTGTGATTATAAATGTGTACAAGCTGGCAATTTGAAAACACACATCATGGCTCACCACACTAAAGAGAAGCCATTTCAGTGTCCCTATTGCGAATTCAAGGCTATTCAGAGTGGGAATCTTAGGCTACACATTATGGCCCTTCATACAAAAGAGAAACCTCATCAATGTCCACATTGTGATTATCGAACTGTTCAGAGTGGGaatttgaaaaaacatattacaaGTTATCATAGCAAAAATGATCAGATTCCTAATTATGAATTGAGGAGTTTGGATCAAGACTTAGAGAAAGTAGAaacttaa
- Protein Sequence
- MVHHTKEKPHKCPHCEYRARQVVQVKTHVMSHHTKEKPHQCPHCEYGAVQPGNLRTHIMIHHTKEKPHQCPHCEYRAVQLVQIKTHIMTHHTNEKPYQCSNCEYKSAIAGNLKTHIIAHHSKEKPFHCTDCEYSSAYRANLKTHIMVHHTKEKPHKCPHCEYSTVLPGNLKTHIVVHHTNEKPHVCPYCEYCAALAVQLKNHIRIHHTLEKPHQCPNCEYTAAHAVNLKTHIMALHTKEKPHKCPHCEYRAVQAGNLKFHIMSHHTKEKPYKCPQCDYSTAHTGNLKTHILVHHTKEKKPHQCPYCDYKAAQIVQVKTHIMSHHTMEKPHHCPHCDYRAVQPGNLKTHIMVHHTKEKPLQCPQCEYRTVQPGNLRTHVMVHHTKEKPHQCPHCEYKAVQPGNLKTHIMSQHTKEKPFQCPFCDYKAVQSAQVKTHIMAHHTHEKPHQCPHCEYRAVQFVQIKTHIMTHHTHEKPQQCPHCDYKCVQAGNLKTHIMAHHTKEKPFQCPYCEFKAIQSGNLRLHIMALHTKEKPHQCPHCDYRTVQSGNLKKHITSYHSKNDQIPNYELRSLDQDLEKVET*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -