Eher086032.1
Basic Information
- Insect
- Euschistus heros
- Gene Symbol
- pol
- Assembly
- GCA_003667255.1
- Location
- RCWM01000356.1:264614-283636[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 2.1e-05 0.013 18.6 0.6 2 23 180 202 179 202 0.92 2 22 3.2e-06 0.002 21.1 0.8 1 23 208 230 208 231 0.96 3 22 0.0038 2.4 11.5 0.2 1 23 237 260 237 260 0.94 4 22 0.046 29 8.1 0.1 1 23 266 289 266 289 0.91 5 22 0.00025 0.16 15.2 1.2 1 23 295 317 295 318 0.95 6 22 0.061 38 7.7 2.7 1 23 324 347 324 347 0.94 7 22 0.0057 3.6 10.9 0.4 1 21 353 373 353 374 0.93 8 22 0.61 3.9e+02 4.5 3.4 1 23 382 404 382 405 0.95 9 22 0.00016 0.099 15.8 1.8 1 23 411 433 411 434 0.95 10 22 0.00014 0.092 15.9 0.4 1 23 440 463 440 463 0.96 11 22 0.0038 2.4 11.5 0.7 1 23 469 492 469 492 0.96 12 22 0.021 13 9.1 0.3 1 23 498 521 498 521 0.94 13 22 2 1.2e+03 2.9 1.1 2 23 528 550 527 550 0.86 14 22 0.012 7.8 9.9 0.5 5 21 569 585 568 585 0.95 15 22 0.0066 4.2 10.7 2.3 1 23 623 646 623 646 0.95 16 22 3.8e-05 0.024 17.8 1.2 2 23 653 675 652 675 0.97 17 22 0.0055 3.5 11.0 0.8 1 23 681 704 681 704 0.96 18 22 0.0025 1.6 12.0 0.4 1 23 710 733 710 733 0.95 19 22 0.00033 0.21 14.8 1.2 1 23 739 762 739 762 0.98 20 22 0.0022 1.4 12.2 0.5 1 23 768 791 768 791 0.94 21 22 1.3e-05 0.008 19.3 1.1 1 23 797 820 797 820 0.96 22 22 0.00016 0.098 15.8 1.6 1 23 826 849 826 849 0.91
Sequence Information
- Coding Sequence
- ATGAACTGTTCTGTTGTTATAAAGGAAGACAAATCAGACAGAATTGAAGCTACTGGCCATGGAAGGGCCTCCTCTTTACCACCAAAAAGGGACTTGAGAGATAATGGACTAGCTCACCCACTCTTCGCCAGACCCTCAGTCCAGCAACAGGTCTTTTCTTCTGGTACAGGCTACCTGCCTCCAGTTAATTACAGGAAAACCACAATATATAAATTGCAAAAATGGTACTCCAAAAATATGGAGGAAGCTGAACAAGCAGTTTTAAATGGCACAGCGGGTCATAGGAAGGCATCTAAGTTTCCTATTGAAACAAAAGACGAGACATGCCCCATCACAGATGTCATTATCCTCCATGACTACACCAGGCCTCACACCATTGCTTTGACAAGGGATACACTGGAAGAAATGGGTGCCAAAGATATTCCATCCCAGATTGAGCTGACGAATAAAATGAGCCTTCTTTATGACCTCAAAGCAGTGAATTCCAGTAAGTTAAGGAGACGTAGGAAAACCATACTTAATCGTGGAAAGCCCTGCAAGTGTCCTCAGTGTGAATATAGTACTACTAGACCTGGAAATTTGAAAAGGCATATAATAGCTATTCATAGAGATGAAAAGCCTTATAAGTGTCCTGAATGTGATTATAATGCTACACAAAGTGAAGCTTTGAAACGCCATATAATGACCCATCATATTGGTAAAAAGCCTCATAAGTGCCCTGAATGTAAGTACAGTGCTGCTGAAGCTGGaactttgaaaaaacatataatagcTCGCCACACAGATGAAAAGCCTTATAAGTGTCCTCAATGTGAGTATAGTGCTGCTGAAATTGGAACTTTGAAAAAGCATATAGTAGCTCGTCATACAGATGAAAAGCCCTATAAGTGTCCTAAGTGTGAGTATAGTGCTAAACAAACTGGAACTTTGAAACGCCATATAATAGCCCACCATACTGGTGACAGGTCTCATTATTGTCCCTATTGTAATTACAAATCAGTGGAAGCTATATGTTTGAAAAGACATTTAATGGCCCGTCATATAAATGATAAGATCCATAAGTGTCCTAAATGTGAATATTATACTACAGGTAATGGAAATTTGAAGAAACATGCAATGATTTATCAAACTGGTGAAAACCCTCATAAATGTCCTAAATGCAAATACAGTGCTACAGAAGATGGAAATTCGAAACAGCACATAATGACCCACCATACAAGTGAAAAGCCTCATAGGTGTCCTCAATGTGAATATAGTTCTACTAAAgctggaaatttgaaaaatcatattataattCATCATACTGATGAAAAGCCTCATAAATGTCCTGAATGTGGATATAGTGCTAAAGAAGCGGGAactttaaaaaagcatataataTCTCGACATTCAGATGAAAAGCCTTATAAGTGTCCTCAATGTGAATATAGAGCAGCCCAGACTGGAACTTTGAAACACCATATAATGGCTCGTCACACTGGTGAAAAGCCTCACAAATGTCCTCTGTGTGATTATTATTCTACTGAAGCCGGATCTatgaaaaaacatataatagcTCTTCATACAGATAGAAAGCCTCTTAAGTGTCATGAATGTGATTATAATGCTTTAGAAACCAGAAGTTTGAAAAAGCATATTATGGCCCGACATACAGGTGCCAAAGATATTCTATCCAAGACTGAACAGATAAATAACCTAAGACTTCATTGTGACTTCAAAACTGTGAATTCCAGTAATTTAACAAGACATATGAAGCCCATGCTCAGTTGTGGAAGACTTCTTACTCACCttgaatatgaatataatatccCGCCAGGTTCCAATATGAAAAGGCAGATAATAGCTAATAATGCTGGTAGAAAACCTTATCAATGTTTCCACTGTGATTATAAAGCAGCAAAAATGTCCACCTTAAAAAGGCATTTAATGGCCCAACATAGTGGTGATATTTCTCAGCAGTGTCCTTATTGTGATTATGTATCTGAGAAAGCTTCAAATTTGAAAAGGCATTTTAGGAAGCGTCATACAACTGGAAAATCCTATAAGTGTCCTTTCTGTGAGCATAATGCTTCAGAATCTGGAAgtttaaaaaagcatattatGGCTCgacatacaggtgagaagccccATAAGTGTCCTGAATGCAAATTTAATGCAACAGAACCTGGGAATTTGAAGCAGCACATAATGGCTCGTCATCGAGGGGAAAAGCCTCATAAATGTCCTGAATGTGAATATAGTGCTACGATAGCTGGACATTTGACACGGCATATAATGACACGCCATTCAGGAGAAAAGCCCCATAAATGTCCTAAATGTGAATATAGTGCTAAAGAAGCTGGAACTTTGAAAAGGCATATAATAGCTCGTCATACAGATGAAAAGCCCTTCAAGTGCCCTCAATGTGAATATTGTGCTACACAACCTGGAAATTTGAAAAGGCACATGATGGCTCGTCATACTGACGAAAAGCCTCATAAATGTCCTCAGTGCGATTATTGTACTACAGACATTGGAAATTTGAAAAGGCATATAGTGGCTCTCCACCCAATTGATAAGCCTCATTTATGTCCTGAATCTGGCTGTAGTAGTACTACAGAAGGTGGAACAATGGAAAAGCCTGTAATATCTCGACATACAGATGAAAAGCCTCTGCTTGATGGTACAGAAACTGGAAAGAACCGATTGAGACCACTCGTGGAACCTCTTATTGGAGAGGAGCAGGCCGGTTTCAGACCCAGGCGACAAACCCAGGACCATATTTTCACCctcagaaatattttacaaaagtcctgggacagagataaaaatatgtacctCGCCTTTCTGGACCTCAAATCAGCCTTTGACTCAGTTCCACGAAATGAAATATGGGAAGCGCTGAGAGTGAAGGGTATTGCAGTGGGACTAGTGGAAGCAATCCGGTCCATTTACCAAGATCCAAAAGGAATTATAAGATTAAACGGTCAGGAATCTAGGCATTTTAATATAGCCAGAGGGGTAAAGCAAGGTGACAGTCTAAGCTCCTTGCTATTCGTACTGTTTATGGACGAAATAGCGTCCATATGTAAAAGAAGGACTGAAAGGACATTTTTAGGTCGAAGAAATCTCATGCCAGTGGTAACTCAGCTCCTaatatatgcagacgacatagtGCTGATCGCTGACTCAGTGGAGAAGCTCCAGCAGGCTGTCACAGAGTGGTTTGAAGAGCTGCGAAGAAAAGGCATGGACATAAACGCCAGTAAAAGTAAGGTCCTACAAGTTGGAAGGCAAGAGGAAGAGGTATTGGTTTACTTCAATGGAGAAGAGTTGGAGGTGGTCACCGATTTTACATATCTGGGAGCAGTTTTGGACAGATCTGGGAAAGTTGACGCGGAAATATCAAGTAGAATAAGCAAAGCAAACGCAGTatactaccagatctgcaaCACTGTTGTTGGTAAAAGAGAAGTGAGCAAGAACGTTAAGCTCCATATCTTCAAATCGATATACCTGCCGATACTCTTATATGGTTCTGAGAGCTGGATCCTCATGGACAGGCAGAAGAGCAGAATCACAGCGGCAGAGATGAGATTTCTTCGTAGGATTGTTGGGAGGACTAGGAGGGACCGAATCCGAAACGAGAGGATTAGGGAAGAATTGGAGGTCGCCCCAGTCATGGAAGCCATTGAGACCAGGCAGCTgaagtggttcggacatgtgGTACGGATGGAAGACCACAGAGATCCACTAAAGACGATGGATTATGCCCCGGAGGGAAGAAGACCTCGAGGCCGCCCAAGATTACCATACCTCGAATACATGGACAGGTTGTGCCGAAAGAGAGGCAAAGATATCCGCCAGACAAGGAACCTAGCAAGGAACAGAGAAGAATGGCATTCCTGGCTGAACGCACCCCGACGCTGA
- Protein Sequence
- MNCSVVIKEDKSDRIEATGHGRASSLPPKRDLRDNGLAHPLFARPSVQQQVFSSGTGYLPPVNYRKTTIYKLQKWYSKNMEEAEQAVLNGTAGHRKASKFPIETKDETCPITDVIILHDYTRPHTIALTRDTLEEMGAKDIPSQIELTNKMSLLYDLKAVNSSKLRRRRKTILNRGKPCKCPQCEYSTTRPGNLKRHIIAIHRDEKPYKCPECDYNATQSEALKRHIMTHHIGKKPHKCPECKYSAAEAGTLKKHIIARHTDEKPYKCPQCEYSAAEIGTLKKHIVARHTDEKPYKCPKCEYSAKQTGTLKRHIIAHHTGDRSHYCPYCNYKSVEAICLKRHLMARHINDKIHKCPKCEYYTTGNGNLKKHAMIYQTGENPHKCPKCKYSATEDGNSKQHIMTHHTSEKPHRCPQCEYSSTKAGNLKNHIIIHHTDEKPHKCPECGYSAKEAGTLKKHIISRHSDEKPYKCPQCEYRAAQTGTLKHHIMARHTGEKPHKCPLCDYYSTEAGSMKKHIIALHTDRKPLKCHECDYNALETRSLKKHIMARHTGAKDILSKTEQINNLRLHCDFKTVNSSNLTRHMKPMLSCGRLLTHLEYEYNIPPGSNMKRQIIANNAGRKPYQCFHCDYKAAKMSTLKRHLMAQHSGDISQQCPYCDYVSEKASNLKRHFRKRHTTGKSYKCPFCEHNASESGSLKKHIMARHTGEKPHKCPECKFNATEPGNLKQHIMARHRGEKPHKCPECEYSATIAGHLTRHIMTRHSGEKPHKCPKCEYSAKEAGTLKRHIIARHTDEKPFKCPQCEYCATQPGNLKRHMMARHTDEKPHKCPQCDYCTTDIGNLKRHIVALHPIDKPHLCPESGCSSTTEGGTMEKPVISRHTDEKPLLDGTETGKNRLRPLVEPLIGEEQAGFRPRRQTQDHIFTLRNILQKSWDRDKNMYLAFLDLKSAFDSVPRNEIWEALRVKGIAVGLVEAIRSIYQDPKGIIRLNGQESRHFNIARGVKQGDSLSSLLFVLFMDEIASICKRRTERTFLGRRNLMPVVTQLLIYADDIVLIADSVEKLQQAVTEWFEELRRKGMDINASKSKVLQVGRQEEEVLVYFNGEELEVVTDFTYLGAVLDRSGKVDAEISSRISKANAVYYQICNTVVGKREVSKNVKLHIFKSIYLPILLYGSESWILMDRQKSRITAAEMRFLRRIVGRTRRDRIRNERIREELEVAPVMEAIETRQLKWFGHVVRMEDHRDPLKTMDYAPEGRRPRGRPRLPYLEYMDRLCRKRGKDIRQTRNLARNREEWHSWLNAPRR*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -