Basic Information

Gene Symbol
snpc-4
Assembly
GCA_003667255.1
Location
RCWM01000019.1:2091378-2092568[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 4 1.7 1.7e+04 -1.2 0.2 3 14 187 198 185 201 0.80
2 4 0.00091 9 9.2 0.1 12 45 242 279 240 280 0.85
3 4 3.2e-14 3.1e-10 42.7 0.3 1 46 286 333 286 333 0.97
4 4 0.32 3.2e+03 1.1 0.1 2 26 338 366 337 370 0.69

Sequence Information

Coding Sequence
atgaaTCAAAAGTCAGGAATGCCTGGCATTTTTTCAATGCTGATGGATCTTGTTAAATCtaatgaagaggaagaagcTCGGGGAACAGAACAACAGATACATGAAATAGAAATATCTGATGAATCAgaggaagaagaaaatgaattaGACATCATTCTTGAAGAAAAcatcattgaagaaaaaattaaggGTTTGACAATGAACAAAAATGAACGTGATGATATTACAGATCTTATTGGCTTACCCAAAGAGAATGAAACAGATTATGTTGGGCAATTGAAAATTGTAGAAACTGCATTACAGCAAAATAGACAACTTAAAATAATGTTACAGGCACTAGAATGTGAACTTCTTCTACTTAAGCGTGATCTTGATAGAAATGTGGATACTTCTTCATCTTTTCACTACACCGTTGAGAAATCTTACAATATAGAATTTTACAGTAGCTTCTCTGCTCCATATTTTAAGTACCAAGGTTTCCCATGCCCTGTTAATTCAGATCAATGTTCTAAAGAGAGAATTAAACCATTGTTATATGAAGATAATGATGTAACTGTCAGCTGGGAAGAAGATGAACttaatattttagaacaatCTATCAGGGACACACTTGTTCAggaatatttttgtagtttggAAGATCACAATAGAATGAAATATGACCAAGACTCTGATCACAAaataatggttattaatgaAGTTTCATTTATAAGGACTGCTGATTTGATggaggtttttaaaaaatatgatgaaaacGCTTTAGATTGGAATAAAATATCttgtaattttcataattctcATTCTGGACGTGACTGCAGGTTAATGTGGGACTTATATTTAAAACCATCAATAAGAAAAGATAAGTGGACAAGGAAAGAAGAAGCTATACTGCTTAAAGCCGCTAAAACATTTAACTATCAAAATTGGGATAGCATTGCTCTTGAGCTTGGTTCTAACAGAACTGGTTATCAATGTTTTAGCCATTACCAACAGCATTTATGTAAAATTTCCAAGAAGTGGTCTCAAGAAGACTTACTGCATTTTCAGACAGTATTACGTTTGGCTAAACAAGGTGAATCCATAAATTGGTctcgaataaaatattttatagatgaTTCTGATTTTATTACTGTGTATAATAAGTGGTATAAAACACGAAGCTTTACTAATGAAGAAGTGAGAAAAAGGTAA
Protein Sequence
MNQKSGMPGIFSMLMDLVKSNEEEEARGTEQQIHEIEISDESEEEENELDIILEENIIEEKIKGLTMNKNERDDITDLIGLPKENETDYVGQLKIVETALQQNRQLKIMLQALECELLLLKRDLDRNVDTSSSFHYTVEKSYNIEFYSSFSAPYFKYQGFPCPVNSDQCSKERIKPLLYEDNDVTVSWEEDELNILEQSIRDTLVQEYFCSLEDHNRMKYDQDSDHKIMVINEVSFIRTADLMEVFKKYDENALDWNKISCNFHNSHSGRDCRLMWDLYLKPSIRKDKWTRKEEAILLKAAKTFNYQNWDSIALELGSNRTGYQCFSHYQQHLCKISKKWSQEDLLHFQTVLRLAKQGESINWSRIKYFIDDSDFITVYNKWYKTRSFTNEEVRKR*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-