Basic Information

Gene Symbol
nfxl1
Assembly
GCA_035586675.1
Location
JAXIUT010000002.1:827519-830263[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 1.1 2e+04 -3.2 1.1 15 19 123 127 122 127 0.81
2 18 0.34 6.5e+03 -1.6 0.3 4 10 158 164 157 164 0.87
3 18 1.2e-08 0.00023 22.2 16.7 1 19 172 189 172 189 0.99
4 18 2.7e-07 0.0052 17.8 17.7 3 19 227 243 215 243 0.83
5 18 0.33 6.3e+03 -1.6 0.3 5 10 267 272 267 274 0.92
6 18 0.00013 2.4 9.3 10.0 1 19 278 297 278 297 0.91
7 18 6.4e-05 1.2 10.3 8.5 1 18 333 350 333 351 0.97
8 18 0.0068 1.3e+02 3.8 7.6 1 12 385 396 385 396 0.94
9 18 1.2 2.3e+04 -3.4 1.7 6 10 406 410 406 410 0.97
10 18 8.7e-08 0.0017 19.4 14.6 1 19 416 434 416 434 0.93
11 18 9.1e-05 1.8 9.8 9.7 9 19 482 492 480 492 0.90
12 18 0.00015 2.9 9.0 6.6 1 12 502 512 502 512 0.95
13 18 0.86 1.6e+04 -2.9 5.8 14 18 543 547 543 548 0.89
14 18 1.6 3.1e+04 -3.8 0.6 9 12 565 568 565 568 0.77
15 18 0.00012 2.4 9.3 7.0 1 12 584 595 578 595 0.91
16 18 0.47 9.1e+03 -2.1 0.9 6 10 610 614 609 614 0.93
17 18 0.008 1.5e+02 3.6 15.3 3 19 623 639 622 639 0.91
18 18 9e-06 0.17 13.0 11.6 1 16 684 698 684 704 0.89

Sequence Information

Coding Sequence
ATGAGGAAATTTCGAAGAGCTCAAGCCCAAAATCAAGCTTCTATTGTAAAACACTTAGAAGCGAATGCTATAGAATCTTCTAGCAGtgatgaagaaaatgaagaagtaTTTGAATCAGCAgtggaaaaagttttatctaatTATCAATGCGAGGGTGgagatgtaaataaaatagtgtCATACTTGACGGAAACTTTTCAATCTGGTGGTGCGGTTTGTCTTATATGTATATCATCTGTAAAGAAGACAGATCCaatatggAGCTGTTCCGAgtgttatacatttttacatttacctTGCATTCAACACTGGGTGAGAGACAGTTTAAGTTACAAACATGAAAAAGGAATCACTCCTTTATGGGCTTGtCCAAAATGCAGAACGGAATACCAGGAAGATCAGATACCAAGAAAATACCTTTGCTTTTGTGGAAAAACAGAAGATCCTCCCTATCAGCCATGGACCATATCTCATTCCTGTGGAAGTATGTgcggaaaatttttacaaccaAAATGTGGCCACAAGTGCATGCTTCTGTGTCATCCTGGACCTTGTCCTCCTTGTCCAAAGATGGTTTCAGTCCCTTGTTTTTGTGGGAAACAAGCACCACAACCTAAGAGGTGTAATGCCAAAGAATGGAGTTGTGGTGAGATATGTGGCAAAAAGTATCAAAGTTGCAATCACAaatgtgtacaaaaatgtCACTCTGGTCCTTGTCCACCTTGctcagaaaaaattctaacagCTTGCAATTGCgaaaataaatctgaattacGCAAATGCAATGAATCTATTTGGAAATGTGACAAAGTATGTGGCCGATCTTTCTCCTGCAATGTTCATGTTTGTAATGAAGTTTGTCATAAGCAAGGTGATTGCAATGCATGTCCATTAGAGCGTAACAGAACATGCCCATGtggtaaaaagaaatatgctATATCTTGCAAGCAACCGCAAGTACCAACATGTGGAGATACATGTGGCAAACTATTAGATTGTGGAGCTCATTACTGCAATATGAGATGTCATACAGATCGTTGTGGACAATGTCTCGAGGTGGTAACAAAAACTTGCAGATGCGAAAGCTTCAGTAAAGAAACTGCCTGTGTCAAAGAATTTCACTGCACCAAAAAGTGTACGCAAATGAGGCTGTGTGGCAGACacttatgcaataaaaaatgttgtgactgtttattaaaaaacaattttaatgtgTGTGAAAAAGTATGTGATAATACTTTGAATTGTCGAAAACATAAGTGTTCAGCTCCTTGTCACAGTGGACCTTGTTATCCGTGCCCTCGTACGGTAGTTATTCAATGCCGCTGTGGCAATAGTAAAATCACTGTACCATGTggtacagttaaaaaaattaaacctcCACATTGCAACAAAATGTGCAAAATTCCACCAATTTGTCATCATCCTAAAAGAGAATCGCATAAATGCCATCAGGGTCCATGTCCACCATGCCGTAAAGTTTGTGGCTTAACATATAAGAAATGTGGTCATACTTGCCCAGCACTTTGTCACACTAAAGTATGGACAAAAGTAAAACCAAATGGAGTGACCAAACCCATAGGACCATGGGAGAACCAAAAAGAAAGATGggaatatcaaaattttccatGCCCTCCTTGTGAAGTTTCTGTCATGGTTACCTGTCTTGGAGGACACGAAACCCGTCCATGGCCTTGCCACAAGGCTATTTCAAGTTCATGCCTTAGAGAATGTGGTCAATTATTATCTTGCACAAATCATAATTGTGAAAGACTTTGTCACAAATTACAATCGTCTAGTGATGACGACGAAGATAAATGTATAGACTGTGAGAAAGTGTGTATTTTTCCAAGACCAAAGGGATGCACACATGTTTGTCCAAAGTCTTGTCATCCAGCACCATGCAATCCATGTAAGAATCTTGTAAAAGTTTCCTGTCACTGTGGTATTAACACACTTTATATTCGTTGTGCTGAACTTACATCTGCTAATACTGAAAAACGCAATGAGATTTTACAATGTGGAAACCAGTGTCCGCGaaattatcCGTGTGGGCACAGATGTGTTGATAACTGCCATCCAGGACCATGCCAAAATACAGAGGCTTGCAACAAAAAGGTCAAggtattttgtaaatgtaaacgAATAAAGAAGGATTTTTCGTGCATTTTAGTACGTTCAGGAAAAGCTGTTGTTGCATGTGATGAAATCTgtcagaaaaagaaagaagagttGGATCGTCTTCGAGAAATTGAGCaagagaaaaaacgaaaagaggAAGAACTCAAGAATcagaaagaaattgaaatgtttgaaaagaaatttaaaccaAAACGAAGAGGAAAGGATCGTcatcaaaataaagaagagtCGCGCAATAAAGGCAGCTCCTGCAAATGGATATGGATCATTGCATTACTCATTGTTGGAATTTCTGTTGCAGTAATGCTGACATTCCACACCAATGgtgaaatattatacattgGATAA
Protein Sequence
MRKFRRAQAQNQASIVKHLEANAIESSSSDEENEEVFESAVEKVLSNYQCEGGDVNKIVSYLTETFQSGGAVCLICISSVKKTDPIWSCSECYTFLHLPCIQHWVRDSLSYKHEKGITPLWACPKCRTEYQEDQIPRKYLCFCGKTEDPPYQPWTISHSCGSMCGKFLQPKCGHKCMLLCHPGPCPPCPKMVSVPCFCGKQAPQPKRCNAKEWSCGEICGKKYQSCNHKCVQKCHSGPCPPCSEKILTACNCENKSELRKCNESIWKCDKVCGRSFSCNVHVCNEVCHKQGDCNACPLERNRTCPCGKKKYAISCKQPQVPTCGDTCGKLLDCGAHYCNMRCHTDRCGQCLEVVTKTCRCESFSKETACVKEFHCTKKCTQMRLCGRHLCNKKCCDCLLKNNFNVCEKVCDNTLNCRKHKCSAPCHSGPCYPCPRTVVIQCRCGNSKITVPCGTVKKIKPPHCNKMCKIPPICHHPKRESHKCHQGPCPPCRKVCGLTYKKCGHTCPALCHTKVWTKVKPNGVTKPIGPWENQKERWEYQNFPCPPCEVSVMVTCLGGHETRPWPCHKAISSSCLRECGQLLSCTNHNCERLCHKLQSSSDDDEDKCIDCEKVCIFPRPKGCTHVCPKSCHPAPCNPCKNLVKVSCHCGINTLYIRCAELTSANTEKRNEILQCGNQCPRNYPCGHRCVDNCHPGPCQNTEACNKKVKVFCKCKRIKKDFSCILVRSGKAVVACDEICQKKKEELDRLREIEQEKKRKEEELKNQKEIEMFEKKFKPKRRGKDRHQNKEESRNKGSSCKWIWIIALLIVGISVAVMLTFHTNGEILYIG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01470178;
90% Identity
iTF_00713387; iTF_01381770;
80% Identity
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