Ecal005232.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Eurytoma californica
Gene Symbol
-
Assembly
GCA_035586675.1
Location
JAXIUT010000021.1:18543296-18548805[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.74 95 4.8 0.8 1 23 45 68 45 68 0.94
2 20 0.0043 0.55 11.9 0.3 1 23 93 116 93 116 0.96
3 20 0.00013 0.017 16.6 1.5 1 23 407 430 407 430 0.98
4 20 6.8e-05 0.0088 17.5 1.1 1 23 462 485 462 485 0.97
5 20 0.17 22 6.8 1.0 2 23 502 524 501 524 0.95
6 20 1.7e-05 0.0022 19.4 4.4 1 23 530 553 530 553 0.96
7 20 0.0023 0.29 12.7 2.9 3 23 560 581 558 581 0.96
8 20 1.7e-05 0.0022 19.4 0.4 1 23 586 609 586 609 0.98
9 20 2.1e-06 0.00026 22.3 1.2 1 23 615 637 615 637 0.97
10 20 0.00028 0.036 15.6 1.9 1 23 643 665 643 665 0.96
11 20 9.3e-05 0.012 17.1 0.7 1 23 671 693 671 693 0.97
12 20 0.089 11 7.7 0.3 2 23 917 939 916 939 0.91
13 20 0.00046 0.059 14.9 0.5 1 23 951 974 951 974 0.97
14 20 0.087 11 7.7 3.5 1 23 988 1011 988 1011 0.93
15 20 0.00031 0.04 15.4 5.8 1 23 1017 1039 1017 1040 0.95
16 20 0.0061 0.79 11.4 0.4 2 23 1046 1068 1045 1068 0.95
17 20 0.0011 0.15 13.7 1.1 1 23 1073 1096 1073 1096 0.97
18 20 6.9e-07 8.9e-05 23.8 0.4 2 23 1103 1124 1102 1124 0.96
19 20 2.2e-06 0.00029 22.2 0.4 1 23 1130 1152 1130 1152 0.97
20 20 7.6e-05 0.0097 17.4 1.0 1 23 1158 1180 1158 1180 0.98

Sequence Information

Coding Sequence
ATGGAGGTGCCAGAGACGAACATCATCCCGAGCAGCGACGACTTCGAAGAGGTGTCAATCGACGGCACGTCGTGCGCGCCCATCTCGTCGCGCtccgtcgccgcggcggccaAGGACAAGCAGTCGGCCTTCTTCATGTGCAAGCCCTGCAACATCTACTTCCCGGAGTACCCGATGCTCAGACGCCACTTGCATTCGGCCCACCGGGAGCGCAAGAGCCTACTGGAGCAGCTGCGCGAGCGCGTCGAGGGCTACATACGCAACTCCTCCGGTCGCTACGTCTGCAACTACTGCAATTACGGCACTTACAGCAAGTCAAACATCGCGAATCACGTGGCGAGGGAGCACGGCAGGAAGTTGCGCTCCGTGGCTGTGCGAACGCCCAGGGTGACCGTGGCCATCGAGACTGCTGCCGGTCCCGTGGCCGAACAAGAACTCATCGACTTCGATTCGGTAGTGCAGAAGGTAGAGCCGAAACCGGAACCGGAGGAAAACTTAGAAGTGGATATGGACCAGTTTGAGGTGGTCGAGGAGCACAAGATAGAGCCGGAGACCGAGCCGGAGCTGGAAATAATGCCTGGAGATATGGACCAGTTTGAGCAAGTTGAGGAGCCGAAGATAGAACcagagaagaaagaagaagaagagtcGGATTTTACGGCAGAGCCAGAGCCGGAAGTGGAACCAGAACCAGAACCGGAACTAGACCTAGAACCAGAACCGGAACTCAACCTAGAACTAGATCCAGAGCAAGAGCTAGTACTAGAGCCAGAACCATATCAAGATGACGACGTACAAGAGGTGTTTGTGGCGCCTGCGCAGGAAATGGAAAAAGCGGAAGAAGAGCACCATGATAATGTTGATCTTATCTTAGAGTCCGAAGAAATTGAGGACCTTGTCATAATACCACCAGACCCAGAAGTAGATCCGATCCAACCCGATCCGGATGCGGAATTACCCGTGGGCCTCGAACACGGCGAAGAGGAAATGATGATCGTACCGGATGATCCCGCGGATGCCGCAATCGTATTGGACGAGGCGCAAATCGTAAACGAAGAGGACCTCCACTACGTGCAGGAAATCGAGGTGACGGCCGAGGAGGCGCCCGCGGAAGGCTTCGAGGACTTCGACGAGAACCGGGAGAACGAGGCGGGCCAGCtgccgcgcgccggcggcaGGTGGCCGGACTCGATGGCCAGCCTGCTGCCGGAGGAGCTGTTCCGCTGCAAGTACTGCGACTACAGCGCGTCGAGGCGGCCGACCCTCTACGCCCACATCAGGCGCAAGCACCGGCAGCTCTGGCTGGAGGCGACGGGCCGCCGCGAGGACGAGCACCCCATGTCCCAGGAGCAGCTCTCCGCCCTCGGACTCGCCAAGCGGGAGTTCCAGTGCCAGTACTGCGACTACGCGTCGACGACCCGCGGCACCCTCGTCAGCCACATGCGCAACAAGCACCCGGGCAAGGAGGTGCCGCCCGCCGTGCGCAAGCCCCTCCTCGACCTGCGCTGCGACATGTGCGACTTCCGCACGCGCAGCCGGCGCAAGATCGAGGTCCACATCGAGCGCAAGCACGTCACCGAGATGCGCTACACCTGCGAGTACTGCGGCAAGAAGTTCAAGGTGAAGTGCGACCTCACCTCGCACATCCGCTTCCAGCACTTCAAGACGCCGACGATCTGCGACGTGTGCGGCAAGATCTGCAGCAACACGAACTCGCTGCACGTGCACCAGAAGCGCGAGCACTTCAAGCCGGAGTTCGAGTGCCACATCTGCGGCAGGCGGGTGGTCAGCCAGGCGAACCTCGACGAGCACATAAGGCGCCAGCACGAGGAGCGCACCAAGCACATGTGCGACCAGTGCGGCAAGGTCTTCGACCAGCCGAACAAGCTGCGCCAGCACATCATGACGCACACCGGCGAGCGGCCGCACACGTGTCCGATCTGCAAAAAGTCCTTCGCCAGGCGGGCGGTGTTCCGCCAGCACTTCCTCATTCACACGGGCGAGAGGCCCTACGTTTGCGACATCTGCGGGAAGGCCTTCACGCAGAAGCCCGGTTTGATATGTCACAGGAAAATGCATCCCGGGGATAAGCCGCCTCTGCCGGTTGTTTATATTGATCACATATTAAAGAGGTTTGGCAGAGCTTCTACGAGCGGCCGAGGGATCTTCGTGTTCGGCCGCGAGTCCCTGGTGATGCGCAAGTGGCAGATCTTGGAGTTCGACGGCCAGCCGTACTACGCCTTCGTGCCGGAGGAGGACGAGCCCATTCGCGAGGAGGCCATTCCCGAGCTCCAAGAAGCGACGCCCGACGAGGACGCCAACTGCCAGCTGGAAGAGCCGGAGGAGAAGAAGCGTCCTCCGGACGACGAGGCGCATTCTACCGAGTACAACGAGGCTGTTGTCGAGGAGGAtcaggaggaggaggaggaggaggaagaggtcGAGATGAAGCCGGTGATCGTGAACGGCAAGGTGCAGCCGCAACCCGAGCCGGAGAACAACCCCCAGTCGTACGCCAGCTACGGCGACGTGTACCAGATGAAACTGGAGGCGGGCGTCGTCACCCTGGAGAAGCTCCAGGTCGAGCCCAAGCAGATGGAAGCCTtcggcgaggaggaggagtACGACCTCCCCGAGGCGGAATACGCCGGGGCCGCCGACGAGGAGCTCGAGGACGAGGAGCAGGTCGACGAGGAAGAGCCGACGGCCGAGGAGGTCGAGGCCACCGAGGGCAAGCGCGGCACCCTCAAGTGCAAGGCCTGCTCCGAGGTGTTCGAGTCGACGACGGCGTTCCGCAAGCACGTCGCCTGGACGCACAAGCGCAAGGTCTGCGTGCAGGAGAACGGCTCGTACATCTGCTCCGTGTGCGACTACCGCACGCCGAGCAAGAGCCAGTTCGCCGCGCACCTGCAGCGCAAGCACGAGACCTGGTCCCGCAAGCGCCAGAGCCCCACCAGCGTCTTCCCCTGCGCCGCCTGCGGCTTCGTCTGCCGCTCCAAGCACTCCCTCCAGTCGCACTTCATCCGCAAGCACACCGACCGCTACGAGCACCAGTGCAAGTTCTGCCCGAAGAAGTTCAAGGTGAAGGGCGACCTGACGAACCACGTGCGCTTCCACCACAAGGAGAAGCCGGTCAAGTGCGACGTGTGCGGCAAGCTCTGCATGAACAGCGGCTCGCTCTACGTGCACCAGAAGTGGGCGCACTACAAGCCCAAGTTCGAGTGCTCGATCTGCCACCGGCGCATGGTCACCCAGGAGAACCTCGACCAGCACATGCTCATGCAGCACGAGAAGCGCGAGAAGATCGTGTGCGCCGAGTGCGGCAAGACCTTCACCAAGAAGGACTCGTTCAAGCGGCACATGGCGGTGCACACGGGCAACAAGCCCTACAACTGCGTCATCTGCAACAAGCCGTTCGCCCGCAGGTCGCAGCTCAGGCAGCACCTGCTCATACACACGGGCAAGCGGCCCTTCGTCTGCGACATCTGCGGCAAGGCCTTCACGCAGAAGCCCGGCCTAATCTGCCACAGGAAGACGCACCCGGGGCCGCATCCGCCCCTCCCGGTCATGCCCATCGGCCACATAGTCAAGCAGTTCACGGAGGGCTACGTGGCGGAGAACCAGCCGGGTAAAAGCGCCGACGAcgcggaggaggaggccgACGAtcccgaggaggaggaggaggacgacgaggaggaggaaggagaggaaggggaggagggggagtaCGAGGAAGAGATCGAGGAGGAGGTGCTGGCAATAGAGGAGCACAAGATTGGATAG
Protein Sequence
MEVPETNIIPSSDDFEEVSIDGTSCAPISSRSVAAAAKDKQSAFFMCKPCNIYFPEYPMLRRHLHSAHRERKSLLEQLRERVEGYIRNSSGRYVCNYCNYGTYSKSNIANHVAREHGRKLRSVAVRTPRVTVAIETAAGPVAEQELIDFDSVVQKVEPKPEPEENLEVDMDQFEVVEEHKIEPETEPELEIMPGDMDQFEQVEEPKIEPEKKEEEESDFTAEPEPEVEPEPEPELDLEPEPELNLELDPEQELVLEPEPYQDDDVQEVFVAPAQEMEKAEEEHHDNVDLILESEEIEDLVIIPPDPEVDPIQPDPDAELPVGLEHGEEEMMIVPDDPADAAIVLDEAQIVNEEDLHYVQEIEVTAEEAPAEGFEDFDENRENEAGQLPRAGGRWPDSMASLLPEELFRCKYCDYSASRRPTLYAHIRRKHRQLWLEATGRREDEHPMSQEQLSALGLAKREFQCQYCDYASTTRGTLVSHMRNKHPGKEVPPAVRKPLLDLRCDMCDFRTRSRRKIEVHIERKHVTEMRYTCEYCGKKFKVKCDLTSHIRFQHFKTPTICDVCGKICSNTNSLHVHQKREHFKPEFECHICGRRVVSQANLDEHIRRQHEERTKHMCDQCGKVFDQPNKLRQHIMTHTGERPHTCPICKKSFARRAVFRQHFLIHTGERPYVCDICGKAFTQKPGLICHRKMHPGDKPPLPVVYIDHILKRFGRASTSGRGIFVFGRESLVMRKWQILEFDGQPYYAFVPEEDEPIREEAIPELQEATPDEDANCQLEEPEEKKRPPDDEAHSTEYNEAVVEEDQEEEEEEEEVEMKPVIVNGKVQPQPEPENNPQSYASYGDVYQMKLEAGVVTLEKLQVEPKQMEAFGEEEEYDLPEAEYAGAADEELEDEEQVDEEEPTAEEVEATEGKRGTLKCKACSEVFESTTAFRKHVAWTHKRKVCVQENGSYICSVCDYRTPSKSQFAAHLQRKHETWSRKRQSPTSVFPCAACGFVCRSKHSLQSHFIRKHTDRYEHQCKFCPKKFKVKGDLTNHVRFHHKEKPVKCDVCGKLCMNSGSLYVHQKWAHYKPKFECSICHRRMVTQENLDQHMLMQHEKREKIVCAECGKTFTKKDSFKRHMAVHTGNKPYNCVICNKPFARRSQLRQHLLIHTGKRPFVCDICGKAFTQKPGLICHRKTHPGPHPPLPVMPIGHIVKQFTEGYVAENQPGKSADDAEEEADDPEEEEEDDEEEEGEEGEEGEYEEEIEEEVLAIEEHKIG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-