Ecal005224.1
Basic Information
- Insect
- Eurytoma californica
- Gene Symbol
- ken
- Assembly
- GCA_035586675.1
- Location
- JAXIUT010000021.1:18517075-18519805[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 4.1e-05 0.0053 18.2 0.4 2 23 55 76 54 76 0.96 2 21 1.6e-06 0.00021 22.6 2.5 1 23 82 104 82 104 0.98 3 21 5.8e-06 0.00075 20.9 0.6 1 23 110 132 110 132 0.97 4 21 5.7e-05 0.0073 17.8 0.1 2 23 139 161 139 161 0.95 5 21 0.52 66 5.3 4.2 1 23 166 188 166 188 0.96 6 21 1.2e-05 0.0016 19.9 0.8 1 23 197 219 197 219 0.98 7 21 7.4e-06 0.00095 20.5 0.2 1 23 225 247 225 247 0.97 8 21 2.9e-05 0.0037 18.7 1.2 2 23 254 275 253 275 0.97 9 21 9.5e-06 0.0012 20.2 0.5 3 23 283 303 281 303 0.97 10 21 0.099 13 7.6 0.0 1 21 367 387 367 390 0.89 11 21 0.00053 0.068 14.7 1.3 2 23 397 418 396 418 0.96 12 21 3e-05 0.0038 18.6 7.6 1 23 436 458 436 458 0.98 13 21 0.00031 0.04 15.4 4.8 2 23 464 485 463 485 0.97 14 21 0.0014 0.18 13.3 0.1 1 23 490 512 490 512 0.98 15 21 3e-06 0.00039 21.8 5.2 1 23 520 542 520 542 0.98 16 21 0.78 1e+02 4.7 3.4 1 23 548 571 548 571 0.93 17 21 0.00026 0.033 15.7 0.3 3 23 584 604 582 604 0.96 18 21 7.4e-06 0.00095 20.5 2.0 1 23 610 632 610 632 0.96 19 21 3.8e-08 4.9e-06 27.7 0.2 1 23 638 660 638 660 0.98 20 21 3e-07 3.8e-05 24.9 0.9 1 23 666 688 666 688 0.98 21 21 0.00067 0.086 14.4 1.7 1 21 694 714 694 715 0.96
Sequence Information
- Coding Sequence
- ATGGAACAAAAAGGTGGCATCGAAATCCACCAAGCAGTCCTCACTAACACCCAGCGATCTTCTATTTTCAGGTCCGCCGTCGGCGCAGAAACCTCACGCTCCAGCGTTCGAAAGTCCCCGCAAAAGGATCCGATGGCCGTCCCCCCGGGGCAGGACGGTATCGAGTGTCCTTACTGCTCGCGCCGCTTCAAGTCGAAGAGCCTGTTCGAGGGTCACCTGATATCCCACAGCGACGCTCGCCCCCACCGCTGCGAAATCTGCGACAAGCGCTTCAAGCGCAGCAACACCCTGGCGGTGCACCGGCGCATTCACACGCTGGACCGGCGCCACGTGTGCGAGCTGTGCGGCCGGGCCTTCGTACAGGCGTCGCAGCTCGGCACTCACCGGCGCCGCCACCTCGAGCGCTACGCGGGCCGCTGCGCCCAGTGCGGCAAGGGCTTCGTCACCCAGGCGGAGCTGCGCGGCCACATGAACGCGCGCCACGGCGCCCGCGAGCACGTGTGCCCGGTGTGCGCGCGGCCCTGCTCGACGCGCCACGCCCTCGCCTGCCACGCCCGCTCCCACGACCCGGACTTCCGGCCGGCCAAGCACCAGTGCGAGGTCTGCGGCAAGACCTTCGCCTTCCGGAACTCCCTGGTGGCGCACGCCAAGTCGCACACAGGCGAGAACCGGCACGAGTGCCCCACCTGCGGCAAGGCGGTGGCCTCCAAGGCCTCGCTGCAGGACCACCAGCGGCTGCACGGCGCCGAGAAGAGCCTCGTCTGCGAGGTCTGCGGCAAGGCCTTCCACAAGAGGACGACCCTGGTGGTGCACCGGCGCACGCACACCGGCGAGAAGCCCTACGGCTGCGACATCTGCGGCAAGGCGTTCGCGCAGCACTCCACCCTCGTGATACACCGCCGGTACCACACCGGCCAGAGGCCGTATAAATTGGCTGAAGCGGCCAGTCCGCCGAGTCCCGCGATAATCACGAAGAAGAAGCAGCAGATGCGGAAGCTTGAGAGCGAGACGTCGCTCGCGACGAAGACCGTAGTGCCGAAGGTGGAGCCGAAGGCGGAGCCGGGCAGCACCGCCGACTTTGAGGACTTGCCGCTGGCCTACATCTGCAAGGTCTGCGTAGTGCCGTTCGCCTCGCAGGAGCTCCTGGACGCGCACTTCGCCGCCCAGCACAAGCCGCGGGGCCGCACCGAGTGCGCGCAGTGCGGCCGCGTCTGCCGCagcctcgcgagcctgcgccaGCACGCCAAGCGACACAAGGGCGAGGACGGCGGTAAGCAGCCGCTACCCTCGCAGCGCGAGCCCCAGTTCAGCTGCACCAGCTGCGACAAGGTATTCCGCCACCGGAGCAACTACCACAAGCACATGCTGCGCCACACCGTCGGCGACCTCACCTGCAAGCACTGTCCTAAAAAGTTCCGGCTGTTCCGCGACCTCACGCGCCACGAGAAGACGCACTTCCTGCCGAGCTACGTGTGCAACGAGTGCGACTACGAGACGACGGTGCTGGCCGCGCTCAGCATCCACATGACCAGGCACACGGACAAGGCCGAGATGCCGTACAAATGTCACGACTGCGACAAGTGTTTCCGCAAGGCTACCGAGCTCCAGGAGCACTACAACATACACTCCGGCGATAAGCCGTTTGCCTGCAAGGTGTGCTCCATCGCCTTCCATCTGAGGCGCCAGCTCTCGGCGCACTGCCGTCGCCTGCACCCGGAGCTGAAGGCGCAGAAGGTCACCAGTACGGCCTGCGACATCTGCGGCCGCGTCCTAGCAACGAAGCGCTCGCTCTTCCGTCATAAGGAGAGCCACAATCCAACGAAGCTGTACCTTTGCGATTTCTGCGGGAAGAGCCTCAGCAGCGCGGAGCATCTGAAGAAACACCGGAGGATACATACCGGGGAGAAGCCCTACGTCTGCGACATCTGCGGCAAAGGCTTCACCGATTCGGAGAACCTCAGGATGCACCGTCGGGTACACACCGGCGAAAAGCCTTACAAGTGTGACCAGTGCCCCAAAGCTTTCAGCCAGCGCTCCACGCTCACTATTCACAGGAGGGGGCACACCGGTGAGAGACCTTACGTCTGCCAGATCTGCCACCGCGGATTCTCTTGCCAGGGCAATCTTACGGCCCATCAAAAGTCCACCTGCGTATAA
- Protein Sequence
- MEQKGGIEIHQAVLTNTQRSSIFRSAVGAETSRSSVRKSPQKDPMAVPPGQDGIECPYCSRRFKSKSLFEGHLISHSDARPHRCEICDKRFKRSNTLAVHRRIHTLDRRHVCELCGRAFVQASQLGTHRRRHLERYAGRCAQCGKGFVTQAELRGHMNARHGAREHVCPVCARPCSTRHALACHARSHDPDFRPAKHQCEVCGKTFAFRNSLVAHAKSHTGENRHECPTCGKAVASKASLQDHQRLHGAEKSLVCEVCGKAFHKRTTLVVHRRTHTGEKPYGCDICGKAFAQHSTLVIHRRYHTGQRPYKLAEAASPPSPAIITKKKQQMRKLESETSLATKTVVPKVEPKAEPGSTADFEDLPLAYICKVCVVPFASQELLDAHFAAQHKPRGRTECAQCGRVCRSLASLRQHAKRHKGEDGGKQPLPSQREPQFSCTSCDKVFRHRSNYHKHMLRHTVGDLTCKHCPKKFRLFRDLTRHEKTHFLPSYVCNECDYETTVLAALSIHMTRHTDKAEMPYKCHDCDKCFRKATELQEHYNIHSGDKPFACKVCSIAFHLRRQLSAHCRRLHPELKAQKVTSTACDICGRVLATKRSLFRHKESHNPTKLYLCDFCGKSLSSAEHLKKHRRIHTGEKPYVCDICGKGFTDSENLRMHRRVHTGEKPYKCDQCPKAFSQRSTLTIHRRGHTGERPYVCQICHRGFSCQGNLTAHQKSTCV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -