Ecal005041.1
Basic Information
- Insect
- Eurytoma californica
- Gene Symbol
- bab1
- Assembly
- GCA_035586675.1
- Location
- JAXIUT010000021.1:16147868-16149768[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6e-12 1.2e-08 35.6 0.1 1 38 323 361 323 365 0.93 2 2 1.3 2.5e+03 -0.7 1.9 4 16 461 473 459 479 0.80
Sequence Information
- Coding Sequence
- ATGAGTGATTCGGGTCAGCAGCAGTACTGTTTGCGGTGGAACAACCACAGTTCCAATTTTGTAACAGTATTTGAAGAGCTTTTCAGAACAGAGGCTTTCACTGATGTCACTTTATCTGCTTACGATGGATTTGCTCTTAGATGCCATAAAATGGTACTGGCTGCATGTTCGACATATTTCCAAGATCTCTTTTTTAGCACAACCTGCGAAAATCCTGTTGTCATTCTGAATGATGTAAATCATGTTGAAATTAAAGCAATTCTGGATTACATGTACAGAGGAGAAGTCAATATAGCTCAAGATCAACTTCCTGGCTTGCTGAGTACTGCTAAATGTTTGAAGatCAAAGGACTAGTGGATGAAAGTGAAACAtctgaagaaaagcacaagaTGGAAGAAGAGGAGATCCTGACACCTCCGCCGTCTAACTCCACAAGTACGAGCAGTACAGCTCATAGCTCTGGATATTTGACCCCTCCTCCCATTCCCAATGCAACTTTTATCCCATACGGAAACATTCCAGTAGAGCAAAACCATAATCACTTGGCATCGTGGTCTGCTTTCTCAGGTCAACCTCCACTGCAACAAGACAATGTTCAAGGTCCAAAGAGCCAGGGCAACTCAACCCACAACAGCCGATCAACAACTCGCAGGAAACTAAGTGGCTCCTATGACAGGTCATCAGAATCTTCTCCTCTCAGCAGGAAGAAACTCTCCAGCATAGTGCACCACCATGACTCGCAGATTTTGAGAAACGTACTTCATCACGGCCAACAGGACCCACACATCCCTGATAACGTGCACCGGAAAAGCAACGGCTCGGCTCACGACAGGGGGAGCAGTGTCGCCTCAGACCACACCGAAACTCCTGTGGATGAAGAAAAACACGTACCGCCAGGAAACTGTTCTGTGTCCACTACTAGATCAGGAAATCCGAAGCCGGAATGGAAGCGCTACAAGCAGTACACACGCGAGCACATCCAAGACGCAATGACTGCCGTACGCACGAAGCAGATGAGTGCCCTTCAAGCTGCTCGCAAGTACGGAGTGCCGTCTCGCACCCTCTACGACAAGCTGAAGAAAGCAGGTATTCTACCGTCTAGAGCGGGAGGCGGTATTCAACGCCGGGACTCTAGCTCACACAGTGGTAGCGCGCGCTTTCCGTACACTTCGCCCACACTTAATGGTAGCATTTACGGTACGAGCGTAGGGACCGCCGCGGTCTCAGAAAGCGAAAGCGAGATCAACGGCTTGGGGTCATTGAGTATCGGCGAGACTGCCTACGACATCGTTCGTAGTCTTCACCACCAGCGCGATTCCGTCAGTCTCACATCCCCTCCTGTATCCATAAGTTCCgtcgccgccgcagccgctgctgctgccatggctgctgctgctgctgccgtgGCTGAAGACTCTGTAATGGACATGTCGAAGATGCGTACTCCCAGTCCCGCCCATCATCATCCCgcaattgtttttaaacactCGCCACACTCATCGCTCCATGTCGAGGACGAAGACCAAGTTGAAGATTTATCCATGTCGCGTACTTCCGGGGGTAGTACTGGGCCGCCTTGCGACGGTAGCCGGTCCAGCGTCTCGCCCCTCAGTACTACCCACAGTCTCCCTCTCGCAGCTGTGCCCTTGCCCCTACGCGCGCTCTCTCCTCTCATCAAGCAAGAGCGAAACGAGGATTCTGATGACGGCTCCTCTCGCACCTGA
- Protein Sequence
- MSDSGQQQYCLRWNNHSSNFVTVFEELFRTEAFTDVTLSAYDGFALRCHKMVLAACSTYFQDLFFSTTCENPVVILNDVNHVEIKAILDYMYRGEVNIAQDQLPGLLSTAKCLKIKGLVDESETSEEKHKMEEEEILTPPPSNSTSTSSTAHSSGYLTPPPIPNATFIPYGNIPVEQNHNHLASWSAFSGQPPLQQDNVQGPKSQGNSTHNSRSTTRRKLSGSYDRSSESSPLSRKKLSSIVHHHDSQILRNVLHHGQQDPHIPDNVHRKSNGSAHDRGSSVASDHTETPVDEEKHVPPGNCSVSTTRSGNPKPEWKRYKQYTREHIQDAMTAVRTKQMSALQAARKYGVPSRTLYDKLKKAGILPSRAGGGIQRRDSSSHSGSARFPYTSPTLNGSIYGTSVGTAAVSESESEINGLGSLSIGETAYDIVRSLHHQRDSVSLTSPPVSISSVAAAAAAAAMAAAAAAVAEDSVMDMSKMRTPSPAHHHPAIVFKHSPHSSLHVEDEDQVEDLSMSRTSGGSTGPPCDGSRSSVSPLSTTHSLPLAAVPLPLRALSPLIKQERNEDSDDGSSRT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00714507;
- 90% Identity
- iTF_00714507;
- 80% Identity
- iTF_00714507;