Ecal024594.1
Basic Information
- Insect
- Eurytoma californica
- Gene Symbol
- lola
- Assembly
- GCA_035586675.1
- Location
- JAXIUT010024926.1:20412-22128[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-12 4.2e-09 37.0 0.0 2 38 3 38 2 42 0.92 2 2 4.3 8.2e+03 -2.3 0.0 30 39 114 123 114 127 0.84
Sequence Information
- Coding Sequence
- ATGAACCCGGACACTGTGATAGCAGCCATTAATGCCCTTAATCAGGGCATGTCCTTGCGCAAAGCCGCCGAGACCTTCGGCATCTCCAAATCCACGCTGCAGCGGCTCAAGAATCAGTATCAGCACGACGTCAATTTCCTATCAGAAAAGATTTTCCAAAGCTCTTCAAATCTACGACTACGAGAATTaaaaaaaatcaccctGAGTTCTATCCTGCGCAACGTGAAACGAACGATCTGTCTGTGTGTGCTTGCAGGCCGGCGACGGGCGATGCGCTGCCTCCCTGGTGGCCAGCGCGTGACCTATCCCTGCGGCAACTGCGGCAAGCACTACAACTACCACTCGAGCTTGGCCCGCCACCTCAGGCACGAGTGCGGCGTCGAGCCCAAGTTCCAGTGCCCGTTCTGCCCGTACCGTACCAAGCACCGTTCCAGCCTCAAGCTCCACGTCAACGGCAAGCACCTGAAGAAGAAGCCCGGCGAGATGCTCACCAGCCTGCCCAGGAAGTAG
- Protein Sequence
- MNPDTVIAAINALNQGMSLRKAAETFGISKSTLQRLKNQYQHDVNFLSEKIFQSSSNLRLRELKKITLSSILRNVKRTICLCVLAGRRRAMRCLPGGQRVTYPCGNCGKHYNYHSSLARHLRHECGVEPKFQCPFCPYRTKHRSSLKLHVNGKHLKKKPGEMLTSLPRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00714795;
- 90% Identity
- iTF_00714795;
- 80% Identity
- iTF_00714795;